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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3733 1lu9_A)  (   41 1a4i_A)     0.6666   0.8570   2.7886 (   0    2   15)   0     0.6666   0.8570    9   7
( 3733 1lu9_A)  (  258 1b0a_A)     0.6666   0.8568   3.6688 (   0    0   15)   0     0.6666   0.8568    9   7
( 3733 1lu9_A)  (  505 1c1d_A)     0.6664   0.6664   4.7953 (   0    6   15)   0     0.6664   0.6664    9   9
( 3733 1lu9_A)  ( 1116 1edz_A)     0.6666   0.7499   2.8932 (   0    2   15)   0     0.6666   0.7499    9   8
( 3733 1lu9_A)  ( 1947 1gtm_A)     0.5553   0.5553   5.9369 (   0    4   10)   0     0.6641   0.6641    9   9
( 3733 1lu9_A)  ( 2015 1gz3_A)     0.7777   0.4118   2.9880 (   0   10   21)   0     0.7777   0.4118    9  17
( 3733 1lu9_A)  ( 2269 1hrd_A)     0.6664   0.4615   4.6632 (   0    6   15)   0     0.6664   0.4615    9  13
( 3733 1lu9_A)  ( 2308 1hwx_A)     0.6665   0.5000   4.3403 (   0    6   15)   0     0.8843   0.6656    9  12
( 3733 1lu9_A)  ( 3609 1leh_A)     0.5553   0.6246   5.8848 (   0    4   10)   0     0.5553   0.6246    9   8
( 3733 1lu9_A)  ( 3733 1lu9_A)     1.0000   1.0000   0.0000 (   0   23   36)   0     1.0000   1.0000    9   9
( 3733 1lu9_A)  ( 4350 1npy_A)     0.6666   0.6000   3.3752 (   0    6   15)   0     0.6666   0.6000    9  10
( 3733 1lu9_A)  ( 4446 1nyt_A)     0.6666   0.6666   3.1813 (   0    6   15)   0     0.6666   0.6666    9   9
( 3733 1lu9_A)  ( 6256 1vi2_A)     0.6666   0.6000   3.1673 (   0    6   15)   0     0.6666   0.6000    9  10

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