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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3609 1leh_A)  (   41 1a4i_A)     0.4998   0.5711   5.9901 (   0    0    6)   0     0.6247   0.7138    8   7
( 3609 1leh_A)  (  258 1b0a_A)     0.4996   0.5707   7.4403 (   0    0    6)   0     0.6247   0.7136    8   7
( 3609 1leh_A)  (  505 1c1d_A)     0.9993   0.8885   3.7221 (   0   17   28)   0     0.9993   0.8885    8   9
( 3609 1leh_A)  ( 1116 1edz_A)     0.4998   0.4998   6.5057 (   0    0    6)   0     0.6246   0.6246    8   8
( 3609 1leh_A)  ( 1947 1gtm_A)     0.9967   0.8871   5.4201 (   0   19   28)   0     0.9967   0.8871    8   9
( 3609 1leh_A)  ( 2015 1gz3_A)     0.6249   0.2941   3.8070 (   0    7   10)   0     0.7483   0.3529    8  17
( 3609 1leh_A)  ( 2269 1hrd_A)     0.9963   0.6151   5.6089 (   0   18   28)   0     0.9963   0.6151    8  13
( 3609 1leh_A)  ( 2308 1hwx_A)     0.9932   0.6658   6.5339 (   0   18   28)   0     0.9932   0.6658    8  12
( 3609 1leh_A)  ( 3609 1leh_A)     1.0000   1.0000   0.0000 (   0   21   28)   0     1.0000   1.0000    8   8
( 3609 1leh_A)  ( 3733 1lu9_A)     0.6246   0.5553   5.8848 (   0    4   10)   0     0.6246   0.5553    8   9
( 3609 1leh_A)  ( 4350 1npy_A)     0.6245   0.4999   5.9450 (   0    4   10)   0     0.6245   0.5381    8  10
( 3609 1leh_A)  ( 4446 1nyt_A)     0.6246   0.5553   5.6568 (   0    4   10)   0     0.7488   0.6660    8   9
( 3609 1leh_A)  ( 6256 1vi2_A)     0.6245   0.4998   5.9943 (   0    4   10)   0     0.7490   0.6230    8  10

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