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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  258 1b0a_A)  (   41 1a4i_A)     0.9998   0.9998   2.6790 (   0    6   21)   0     0.9998   0.9998    7   7
(  258 1b0a_A)  (  258 1b0a_A)     1.0000   1.0000   0.0000 (   0    6   21)   0     1.0000   1.0000    7   7
(  258 1b0a_A)  (  505 1c1d_A)     0.8550   0.6661   5.9102 (   0    0   15)   0     0.8550   0.6661    7   9
(  258 1b0a_A)  ( 1116 1edz_A)     0.9996   0.8748   3.2011 (   0    6   21)   0     0.9996   0.8748    7   8
(  258 1b0a_A)  ( 1947 1gtm_A)     0.5655   0.4427  12.7047 (   0    0    6)   0     0.7126   0.5551    7   9
(  258 1b0a_A)  ( 2015 1gz3_A)     0.8567   0.3529   3.9197 (   0    0   15)   0     0.8569   0.3529    7  17
(  258 1b0a_A)  ( 2269 1hrd_A)     0.8550   0.4614   5.8876 (   0    0   15)   0     0.8550   0.4614    7  13
(  258 1b0a_A)  ( 2308 1hwx_A)     0.8552   0.4999   5.7411 (   0    0   15)   0     0.8552   0.4999    7  12
(  258 1b0a_A)  ( 3609 1leh_A)     0.5707   0.4996   7.4403 (   0    0    6)   0     0.7136   0.6247    7   8
(  258 1b0a_A)  ( 3733 1lu9_A)     0.8568   0.6666   3.6688 (   0    0   15)   0     0.8568   0.6666    7   9
(  258 1b0a_A)  ( 4350 1npy_A)     0.7141   0.5000   4.1514 (   0    0   10)   0     0.8565   0.5999    7  10
(  258 1b0a_A)  ( 4446 1nyt_A)     0.8568   0.6666   3.7693 (   0    0   15)   0     0.8568   0.6666    7   9
(  258 1b0a_A)  ( 6256 1vi2_A)     0.8568   0.5999   3.7309 (   0    0   15)   0     0.8568   0.5999    7  10

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