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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2308 1hwx_A)  (   41 1a4i_A)     0.4999   0.8564   4.5813 (   0    2   15)   0     0.4999   0.8564   12   7
( 2308 1hwx_A)  (  258 1b0a_A)     0.4999   0.8552   5.7411 (   0    0   15)   0     0.4999   0.8552   12   7
( 2308 1hwx_A)  (  505 1c1d_A)     0.6666   0.8886   3.4847 (   0   20   28)   0     0.7453   0.9808   12   9
( 2308 1hwx_A)  ( 1116 1edz_A)     0.4999   0.7494   5.1101 (   0    3   15)   0     0.4999   0.7494   12   8
( 2308 1hwx_A)  ( 1947 1gtm_A)     0.7499   0.9994   3.5824 (   0   25   36)   0     0.7499   0.9994   12   9
( 2308 1hwx_A)  ( 2015 1gz3_A)     0.4166   0.2941   4.6053 (   0    6   10)   0     0.4973   0.4432   12  17
( 2308 1hwx_A)  ( 2269 1hrd_A)     0.9163   0.8459   3.5171 (   0   38   55)   0     0.9163   0.8459   12  13
( 2308 1hwx_A)  ( 2308 1hwx_A)     1.0000   1.0000   0.0000 (   0   54   66)   0     1.0000   1.0000   12  12
( 2308 1hwx_A)  ( 3609 1leh_A)     0.6658   0.9932   6.5339 (   0   18   28)   0     0.6658   0.9932   12   8
( 2308 1hwx_A)  ( 3733 1lu9_A)     0.5000   0.6665   4.3403 (   0    6   15)   0     0.6656   0.8843   12   9
( 2308 1hwx_A)  ( 4350 1npy_A)     0.4718   0.5385   4.9597 (   1    7   15)   0     0.4718   0.5385   12  10
( 2308 1hwx_A)  ( 4446 1nyt_A)     0.4825   0.6040   4.8416 (   1    8   15)   0     0.4825   0.6040   12   9
( 2308 1hwx_A)  ( 6256 1vi2_A)     0.4719   0.5386   4.5026 (   1    7   15)   0     0.4719   0.5386   12  10

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