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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1947 1gtm_A)  (   41 1a4i_A)     0.5552   0.7131   6.4653 (   0    1   10)   0     0.6646   0.8499    9   7
( 1947 1gtm_A)  (  258 1b0a_A)     0.4427   0.5655  12.7047 (   0    0    6)   0     0.5551   0.7126    9   7
( 1947 1gtm_A)  (  505 1c1d_A)     0.8833   0.8833   7.1885 (   0   17   28)   0     0.8833   0.8833    9   9
( 1947 1gtm_A)  ( 1116 1edz_A)     0.5551   0.6241   7.0508 (   0    2   10)   0     0.5551   0.6241    9   8
( 1947 1gtm_A)  ( 1947 1gtm_A)     1.0000   1.0000   0.0000 (   0   26   36)   0     1.0000   1.0000    9   9
( 1947 1gtm_A)  ( 2015 1gz3_A)     0.5554   0.2941   5.6002 (   0    7   10)   0     0.7749   0.4116    9  17
( 1947 1gtm_A)  ( 2269 1hrd_A)     0.9997   0.6923   3.0923 (   0   23   36)   0     0.9997   0.6923    9  13
( 1947 1gtm_A)  ( 2308 1hwx_A)     0.9994   0.7499   3.5824 (   0   25   36)   0     0.9994   0.7499    9  12
( 1947 1gtm_A)  ( 3609 1leh_A)     0.8871   0.9967   5.4201 (   0   19   28)   0     0.8871   0.9967    9   8
( 1947 1gtm_A)  ( 3733 1lu9_A)     0.5553   0.5553   5.9369 (   0    4   10)   0     0.6641   0.6641    9   9
( 1947 1gtm_A)  ( 4350 1npy_A)     0.4444   0.4000   4.9034 (   0    0    6)   0     0.6655   0.5993    9  10
( 1947 1gtm_A)  ( 4446 1nyt_A)     0.4444   0.4444   4.4760 (   0    1    6)   0     0.4444   0.4444    9   9
( 1947 1gtm_A)  ( 6256 1vi2_A)     0.5553   0.4998   6.0133 (   0    4   10)   0     0.6651   0.5991    9  10

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