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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1116 1edz_A)  (   41 1a4i_A)     0.8750   0.9999   1.6455 (   0    8   21)   0     0.8750   0.9999    8   7
( 1116 1edz_A)  (  258 1b0a_A)     0.8748   0.9996   3.2011 (   0    6   21)   0     0.8748   0.9996    8   7
( 1116 1edz_A)  (  505 1c1d_A)     0.7492   0.6662   5.3765 (   0    3   15)   0     0.7492   0.6662    8   9
( 1116 1edz_A)  ( 1116 1edz_A)     1.0000   1.0000   0.0000 (   0   16   28)   0     1.0000   1.0000    8   8
( 1116 1edz_A)  ( 1947 1gtm_A)     0.6241   0.5551   7.0508 (   0    2   10)   0     0.6241   0.5551    8   9
( 1116 1edz_A)  ( 2015 1gz3_A)     0.6236   0.2941   7.9547 (   0    4   10)   0     0.7491   0.3529    8  17
( 1116 1edz_A)  ( 2269 1hrd_A)     0.7492   0.4615   5.5297 (   0    3   15)   0     0.7492   0.4615    8  13
( 1116 1edz_A)  ( 2308 1hwx_A)     0.7494   0.4999   5.1101 (   0    3   15)   0     0.7494   0.4999    8  12
( 1116 1edz_A)  ( 3609 1leh_A)     0.4998   0.4998   6.5057 (   0    0    6)   0     0.6246   0.6246    8   8
( 1116 1edz_A)  ( 3733 1lu9_A)     0.7499   0.6666   2.8932 (   0    2   15)   0     0.7499   0.6666    8   9
( 1116 1edz_A)  ( 4350 1npy_A)     0.7499   0.6000   3.3041 (   0    2   15)   0     0.7499   0.6000    8  10
( 1116 1edz_A)  ( 4446 1nyt_A)     0.7497   0.6665   4.1214 (   0    3   15)   0     0.7497   0.6665    8   9
( 1116 1edz_A)  ( 6256 1vi2_A)     0.7493   0.5998   5.2048 (   0    6   15)   0     0.7493   0.6234    8  10

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