------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 886 1dmu_A) ( 62 1a79_A) 0.1905 0.5684 10.7587 ( 0 4 6) 0 0.1905 0.5684 21 7 ( 886 1dmu_A) ( 222 1avq_A) 0.1905 0.2857 8.1328 ( 0 5 6) 0 0.2190 0.2857 21 14 ( 886 1dmu_A) ( 250 1azo ) 0.2336 0.3284 8.4620 ( 2 9 10) 0 0.3688 0.4331 21 14 ( 886 1dmu_A) ( 336 1bam ) 0.1905 0.2857 5.6439 ( 0 2 6) 0 0.2696 0.3470 21 14 ( 886 1dmu_A) ( 581 1cfr ) 0.1905 0.2500 6.3936 ( 0 5 6) 0 0.2403 0.2524 21 16 ( 886 1dmu_A) ( 621 1ckq_A) 0.2311 0.2758 9.4251 ( 2 8 10) 0 0.3338 0.3541 21 17 ( 886 1dmu_A) ( 717 1d02_A) 0.2381 0.3845 7.7401 ( 0 4 10) 0 0.2381 0.3845 21 13 ( 886 1dmu_A) ( 788 1dc1_A) 0.3801 0.3801 8.1826 ( 1 13 28) 0 0.3801 0.3801 21 21 ( 886 1dmu_A) ( 825 1dfm_A) 0.2376 0.2928 8.0246 ( 1 8 10) 0 0.2590 0.2928 21 17 ( 886 1dmu_A) ( 886 1dmu_A) 1.0000 1.0000 0.0000 ( 0 180 210) 0 1.0000 1.0000 21 21 ( 886 1dmu_A) ( 982 1dzf_A) 0.3388 0.4243 7.4678 ( 3 13 28) 0 0.3388 0.5040 21 10 ( 886 1dmu_A) ( 1276 1ev7_A) 0.3333 0.3889 5.6931 ( 0 14 21) 0 0.3333 0.3889 21 18 ( 886 1dmu_A) ( 1367 1f1z_A) 0.1905 0.3635 8.8094 ( 0 3 6) 0 0.2803 0.4539 21 11 ( 886 1dmu_A) ( 1512 1fiu_A) 0.2336 0.2685 9.5184 ( 2 9 10) 0 0.2989 0.3077 21 18 ( 886 1dmu_A) ( 1665 1fzr_A) 0.1905 0.4436 10.4863 ( 0 3 6) 0 0.2049 0.4436 21 9 ( 886 1dmu_A) ( 1808 1gef_A) 0.3809 0.8878 4.7592 ( 0 18 28) 0 0.3809 0.8878 21 9 ( 886 1dmu_A) ( 2210 1hh1_A) 0.1905 0.4441 8.1787 ( 0 5 6) 0 0.2531 0.5544 21 9 ( 886 1dmu_A) ( 2707 1j23_A) 0.1905 0.3997 9.3999 ( 0 4 6) 0 0.3178 0.4203 21 10 ( 886 1dmu_A) ( 3258 1kc6_A) 0.3809 0.4704 6.3964 ( 0 19 28) 0 0.5228 0.6442 21 17 ( 886 1dmu_A) ( 3365 1knv_A) 0.1905 0.2667 6.5341 ( 0 4 6) 0 0.3369 0.3660 21 15 ( 886 1dmu_A) ( 4182 1na6_A) 0.1900 0.3521 10.3231 ( 1 6 6) 0 0.2351 0.3990 21 11 ( 886 1dmu_A) ( 5514 1r0v_A) 0.2852 0.7677 6.4461 ( 1 10 15) 0 0.2852 0.7677 21 7 ( 886 1dmu_A) ( 5516 1r0v_A) 0.1905 0.4989 9.8697 ( 0 5 6) 0 0.2064 0.4994 21 8 ( 886 1dmu_A) ( 5795 1sdo_A) 0.1905 0.2666 7.8675 ( 0 4 6) 0 0.3278 0.3973 21 15 ( 886 1dmu_A) ( 5867 1sx5_A) 0.3809 0.4999 5.0020 ( 0 13 28) 0 0.4605 0.5718 21 16 ( 886 1dmu_A) ( 6324 1vsr_A) 0.2381 0.6244 6.4506 ( 0 5 10) 0 0.2381 0.6244 21 8 ( 886 1dmu_A) ( 6453 2fok_A) 0.3746 0.4505 6.7771 ( 3 14 36) 0 0.3746 0.4505 21 12 ( 886 1dmu_A) ( 6592 3pvi_A) 0.1905 0.4996 7.7795 ( 0 3 6) 0 0.2351 0.4996 21 8 -------------------------------------------------------------------------------------------------------------------------