------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 788 1dc1_A) ( 62 1a79_A) 0.3021 0.3974 6.3573 ( 3 12 21) 0 0.3021 0.8438 21 7 ( 788 1dc1_A) ( 222 1avq_A) 0.2696 0.3473 7.6891 ( 2 8 15) 0 0.2785 0.3846 21 14 ( 788 1dc1_A) ( 250 1azo ) 0.1905 0.2857 7.6894 ( 0 5 6) 0 0.2821 0.4044 21 14 ( 788 1dc1_A) ( 336 1bam ) 0.2856 0.4278 10.8038 ( 0 7 15) 0 0.3019 0.4278 21 14 ( 788 1dc1_A) ( 581 1cfr ) 0.4739 0.6161 6.9391 ( 2 26 45) 0 0.4739 0.6161 21 16 ( 788 1dc1_A) ( 621 1ckq_A) 0.4285 0.5293 5.3981 ( 0 13 36) 0 0.4761 0.5879 21 17 ( 788 1dc1_A) ( 717 1d02_A) 0.4286 0.6921 4.2917 ( 0 17 36) 0 0.4286 0.6921 21 13 ( 788 1dc1_A) ( 788 1dc1_A) 1.0000 1.0000 0.0000 ( 0 167 210) 0 1.0000 1.0000 21 21 ( 788 1dc1_A) ( 825 1dfm_A) 0.2857 0.3529 7.1571 ( 0 8 15) 0 0.3926 0.4464 21 17 ( 788 1dc1_A) ( 886 1dmu_A) 0.3801 0.3801 8.1826 ( 1 13 28) 0 0.3801 0.3801 21 21 ( 788 1dc1_A) ( 982 1dzf_A) 0.3333 0.6979 7.5743 ( 0 5 21) 0 0.4279 0.8743 21 10 ( 788 1dc1_A) ( 1276 1ev7_A) 0.2531 0.2638 8.4250 ( 5 14 21) 0 0.3328 0.3878 21 18 ( 788 1dc1_A) ( 1367 1f1z_A) 0.2851 0.5302 12.3481 ( 1 10 15) 0 0.4279 0.8030 21 11 ( 788 1dc1_A) ( 1512 1fiu_A) 0.5135 0.5898 8.8649 ( 3 30 55) 0 0.5135 0.5898 21 18 ( 788 1dc1_A) ( 1665 1fzr_A) 0.2857 0.6665 3.9463 ( 0 2 15) 0 0.2857 0.6665 21 9 ( 788 1dc1_A) ( 1808 1gef_A) 0.3332 0.7686 9.6686 ( 0 12 21) 0 0.3332 0.7686 21 9 ( 788 1dc1_A) ( 2210 1hh1_A) 0.2765 0.2990 6.6226 ( 4 12 28) 0 0.2765 0.5553 21 9 ( 788 1dc1_A) ( 2707 1j23_A) 0.2857 0.5999 4.3869 ( 0 5 15) 0 0.2857 0.5999 21 10 ( 788 1dc1_A) ( 3258 1kc6_A) 0.2381 0.2940 10.8019 ( 0 6 10) 0 0.2765 0.2940 21 17 ( 788 1dc1_A) ( 3365 1knv_A) 0.4758 0.6646 7.0931 ( 1 25 45) 0 0.4758 0.6646 21 15 ( 788 1dc1_A) ( 4182 1na6_A) 0.1905 0.3635 7.9455 ( 0 5 6) 0 0.2751 0.4426 21 11 ( 788 1dc1_A) ( 5514 1r0v_A) 0.3021 0.3974 6.1925 ( 3 12 21) 0 0.3021 0.5713 21 7 ( 788 1dc1_A) ( 5516 1r0v_A) 0.3021 0.3957 6.2848 ( 3 12 21) 0 0.3021 0.7441 21 8 ( 788 1dc1_A) ( 5795 1sdo_A) 0.2381 0.3333 7.8791 ( 0 2 10) 0 0.4732 0.6512 21 15 ( 788 1dc1_A) ( 5867 1sx5_A) 0.1905 0.2500 7.3517 ( 0 2 6) 0 0.2575 0.2634 21 16 ( 788 1dc1_A) ( 6324 1vsr_A) 0.2857 0.7450 8.6382 ( 0 8 15) 0 0.3333 0.8738 21 8 ( 788 1dc1_A) ( 6453 2fok_A) 0.4200 0.6486 7.4699 ( 2 16 36) 0 0.4241 0.6894 21 12 ( 788 1dc1_A) ( 6592 3pvi_A) 0.1904 0.4963 13.3525 ( 0 2 6) 0 0.1904 0.4963 21 8 -------------------------------------------------------------------------------------------------------------------------