------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6592 3pvi_A) ( 62 1a79_A) 0.6246 0.7135 5.6809 ( 0 5 10) 0 0.6246 0.7135 8 7 ( 6592 3pvi_A) ( 222 1avq_A) 0.4999 0.2857 5.4943 ( 0 2 6) 0 0.4999 0.3119 8 14 ( 6592 3pvi_A) ( 250 1azo ) 0.8739 0.4999 4.8792 ( 0 13 21) 0 0.8739 0.4999 8 14 ( 6592 3pvi_A) ( 336 1bam ) 0.4979 0.2856 11.4978 ( 0 4 6) 0 0.4979 0.2856 8 14 ( 6592 3pvi_A) ( 581 1cfr ) 0.4997 0.2500 6.9291 ( 0 5 6) 0 0.5523 0.4020 8 16 ( 6592 3pvi_A) ( 621 1ckq_A) 0.4179 0.2324 15.0067 ( 1 5 6) 0 0.4179 0.2497 8 17 ( 6592 3pvi_A) ( 717 1d02_A) 0.3668 0.2854 10.6959 ( 1 4 6) 0 0.3668 0.2854 8 13 ( 6592 3pvi_A) ( 788 1dc1_A) 0.4963 0.1904 13.3525 ( 0 2 6) 0 0.4963 0.1904 8 21 ( 6592 3pvi_A) ( 825 1dfm_A) 0.4998 0.2353 6.1643 ( 0 2 6) 0 0.4998 0.2859 8 17 ( 6592 3pvi_A) ( 886 1dmu_A) 0.4994 0.1905 8.3581 ( 0 1 6) 0 0.4994 0.2351 8 21 ( 6592 3pvi_A) ( 982 1dzf_A) 0.4995 0.3998 8.2202 ( 0 1 6) 0 0.4996 0.3999 8 10 ( 6592 3pvi_A) ( 1276 1ev7_A) 0.8031 0.3874 5.6176 ( 1 11 21) 0 0.8031 0.3874 8 18 ( 6592 3pvi_A) ( 1367 1f1z_A) 0.4978 0.3632 11.6982 ( 0 2 6) 0 0.4978 0.3632 8 11 ( 6592 3pvi_A) ( 1512 1fiu_A) 0.4999 0.2222 5.5093 ( 0 2 6) 0 0.4999 0.2715 8 18 ( 6592 3pvi_A) ( 1665 1fzr_A) 0.4993 0.4441 8.6294 ( 0 2 6) 0 0.4993 0.4441 8 9 ( 6592 3pvi_A) ( 1808 1gef_A) 0.6249 0.5555 3.7957 ( 0 5 10) 0 0.6249 0.5555 8 9 ( 6592 3pvi_A) ( 2210 1hh1_A) 0.7470 0.6650 7.5951 ( 0 5 15) 0 0.7470 0.6650 8 9 ( 6592 3pvi_A) ( 2707 1j23_A) 0.4996 0.3999 7.4202 ( 0 1 6) 0 0.4996 0.3999 8 10 ( 6592 3pvi_A) ( 3258 1kc6_A) 0.4991 0.2353 9.3487 ( 0 3 6) 0 0.4991 0.2353 8 17 ( 6592 3pvi_A) ( 3365 1knv_A) 0.4995 0.2666 7.9042 ( 0 0 6) 0 0.5679 0.4310 8 15 ( 6592 3pvi_A) ( 4182 1na6_A) 0.5142 0.4232 6.8057 ( 1 6 10) 0 0.5142 0.4232 8 11 ( 6592 3pvi_A) ( 5514 1r0v_A) 0.6248 0.7139 4.7828 ( 0 5 10) 0 0.6248 0.7139 8 7 ( 6592 3pvi_A) ( 5516 1r0v_A) 0.6245 0.6245 6.0702 ( 0 5 10) 0 0.6245 0.6245 8 8 ( 6592 3pvi_A) ( 5795 1sdo_A) 0.4983 0.2666 10.9769 ( 0 3 6) 0 0.4983 0.2666 8 15 ( 6592 3pvi_A) ( 5867 1sx5_A) 0.4999 0.2500 5.2142 ( 0 3 6) 0 0.6248 0.3125 8 16 ( 6592 3pvi_A) ( 6324 1vsr_A) 0.0999 0.0999 7.9197 ( 1 1 6) 0 0.1499 0.1499 8 8 ( 6592 3pvi_A) ( 6453 2fok_A) 0.4997 0.3333 6.8301 ( 0 2 6) 0 0.6233 0.4164 8 12 ( 6592 3pvi_A) ( 6592 3pvi_A) 1.0000 1.0000 0.0000 ( 0 18 28) 0 1.0000 1.0000 8 8 -------------------------------------------------------------------------------------------------------------------------