------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6453 2fok_A) ( 62 1a79_A) 0.3333 0.5712 5.5623 ( 0 2 6) 0 0.3333 0.5712 12 7 ( 6453 2fok_A) ( 222 1avq_A) 0.4157 0.3567 11.8440 ( 0 5 10) 0 0.4157 0.3567 12 14 ( 6453 2fok_A) ( 250 1azo ) 0.4089 0.3535 10.0383 ( 1 8 10) 0 0.4089 0.3535 12 14 ( 6453 2fok_A) ( 336 1bam ) 0.4167 0.3571 2.6639 ( 0 4 10) 0 0.4996 0.4284 12 14 ( 6453 2fok_A) ( 581 1cfr ) 0.7441 0.5611 4.5776 ( 1 18 36) 0 0.7441 0.5611 12 16 ( 6453 2fok_A) ( 621 1ckq_A) 0.8132 0.5845 5.6787 ( 1 15 45) 0 0.8132 0.5845 12 17 ( 6453 2fok_A) ( 717 1d02_A) 0.8173 0.7583 5.6059 ( 1 16 45) 0 0.8173 0.7583 12 13 ( 6453 2fok_A) ( 788 1dc1_A) 0.6486 0.4200 7.4699 ( 2 16 36) 0 0.6894 0.4241 12 21 ( 6453 2fok_A) ( 825 1dfm_A) 0.5833 0.4118 3.2308 ( 0 11 21) 0 0.6665 0.4706 12 17 ( 6453 2fok_A) ( 886 1dmu_A) 0.4505 0.3746 6.7771 ( 3 14 36) 0 0.4505 0.3746 12 21 ( 6453 2fok_A) ( 982 1dzf_A) 0.5833 0.6999 3.5704 ( 0 7 21) 0 0.5833 0.6999 12 10 ( 6453 2fok_A) ( 1276 1ev7_A) 0.3333 0.2222 6.9923 ( 0 1 6) 0 0.3333 0.2222 12 18 ( 6453 2fok_A) ( 1367 1f1z_A) 0.5000 0.5454 3.6879 ( 0 6 15) 0 0.5000 0.5454 12 11 ( 6453 2fok_A) ( 1512 1fiu_A) 0.7450 0.4993 4.9207 ( 1 19 36) 0 0.7832 0.5481 12 18 ( 6453 2fok_A) ( 1665 1fzr_A) 0.4167 0.5555 2.9362 ( 0 2 10) 0 0.4167 0.5555 12 9 ( 6453 2fok_A) ( 1808 1gef_A) 0.3333 0.4444 5.8015 ( 0 2 6) 0 0.3333 0.4444 12 9 ( 6453 2fok_A) ( 2210 1hh1_A) 0.3333 0.4443 6.2379 ( 0 1 6) 0 0.3333 0.4443 12 9 ( 6453 2fok_A) ( 2707 1j23_A) 0.4165 0.4995 7.8607 ( 0 2 10) 0 0.6664 0.7992 12 10 ( 6453 2fok_A) ( 3258 1kc6_A) 0.4166 0.2941 6.8687 ( 0 5 10) 0 0.4166 0.3256 12 17 ( 6453 2fok_A) ( 3365 1knv_A) 0.7408 0.5969 4.6317 ( 1 16 36) 0 0.7408 0.5969 12 15 ( 6453 2fok_A) ( 4182 1na6_A) 0.3328 0.3629 13.4180 ( 0 5 6) 0 0.3774 0.3988 12 11 ( 6453 2fok_A) ( 5514 1r0v_A) 0.3333 0.5711 6.3336 ( 0 1 6) 0 0.3333 0.5711 12 7 ( 6453 2fok_A) ( 5516 1r0v_A) 0.3333 0.4997 6.8640 ( 0 1 6) 0 0.3966 0.5142 12 8 ( 6453 2fok_A) ( 5795 1sdo_A) 0.4167 0.3333 3.2004 ( 0 4 10) 0 0.4167 0.3333 12 15 ( 6453 2fok_A) ( 5867 1sx5_A) 0.3330 0.2499 12.0221 ( 0 4 6) 0 0.3330 0.2690 12 16 ( 6453 2fok_A) ( 6324 1vsr_A) 0.5820 0.8653 8.4457 ( 0 9 21) 0 0.5820 0.8653 12 8 ( 6453 2fok_A) ( 6453 2fok_A) 1.0000 1.0000 0.0000 ( 0 45 66) 0 1.0000 1.0000 12 12 ( 6453 2fok_A) ( 6592 3pvi_A) 0.3333 0.4997 6.8301 ( 0 2 6) 0 0.4164 0.6233 12 8 -------------------------------------------------------------------------------------------------------------------------