------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6324 1vsr_A) ( 62 1a79_A) 0.4999 0.5713 4.9138 ( 0 0 6) 0 0.4999 0.5713 8 7 ( 6324 1vsr_A) ( 222 1avq_A) 0.4995 0.2857 7.9462 ( 0 4 6) 0 0.7483 0.4285 8 14 ( 6324 1vsr_A) ( 250 1azo ) 0.4990 0.2857 9.6747 ( 0 2 6) 0 0.4990 0.3192 8 14 ( 6324 1vsr_A) ( 336 1bam ) 0.6238 0.3571 7.5817 ( 0 4 10) 0 0.6238 0.5082 8 14 ( 6324 1vsr_A) ( 581 1cfr ) 0.6225 0.3124 9.1718 ( 0 3 10) 0 0.8734 0.4374 8 16 ( 6324 1vsr_A) ( 621 1ckq_A) 0.4999 0.2353 4.8113 ( 0 1 6) 0 0.8740 0.4117 8 17 ( 6324 1vsr_A) ( 717 1d02_A) 0.7433 0.4609 9.3425 ( 0 7 15) 0 0.8747 0.5384 8 13 ( 6324 1vsr_A) ( 788 1dc1_A) 0.7450 0.2857 8.6382 ( 0 8 15) 0 0.8738 0.3333 8 21 ( 6324 1vsr_A) ( 825 1dfm_A) 0.7431 0.3528 9.4095 ( 0 7 15) 0 0.9416 0.4690 8 17 ( 6324 1vsr_A) ( 886 1dmu_A) 0.6244 0.2381 6.4506 ( 0 5 10) 0 0.6244 0.2381 8 21 ( 6324 1vsr_A) ( 982 1dzf_A) 0.7496 0.5999 4.5602 ( 0 5 15) 0 0.7496 0.5999 8 10 ( 6324 1vsr_A) ( 1276 1ev7_A) 0.4960 0.2222 13.5664 ( 0 4 6) 0 0.4960 0.2222 8 18 ( 6324 1vsr_A) ( 1367 1f1z_A) 0.6227 0.4541 8.9475 ( 0 3 10) 0 0.7477 0.5450 8 11 ( 6324 1vsr_A) ( 1512 1fiu_A) 0.6225 0.2777 9.1296 ( 0 4 10) 0 0.6225 0.2777 8 18 ( 6324 1vsr_A) ( 1665 1fzr_A) 0.1497 0.1495 19.0131 ( 2 3 6) 0 0.1497 0.1495 8 9 ( 6324 1vsr_A) ( 1808 1gef_A) 0.4999 0.4444 5.3681 ( 0 0 6) 0 0.4999 0.4444 8 9 ( 6324 1vsr_A) ( 2210 1hh1_A) 0.6249 0.5555 4.3563 ( 0 2 10) 0 0.6249 0.5555 8 9 ( 6324 1vsr_A) ( 2707 1j23_A) 0.6246 0.4999 5.7326 ( 0 3 10) 0 0.7497 0.5999 8 10 ( 6324 1vsr_A) ( 3258 1kc6_A) 0.4994 0.2353 8.2500 ( 0 2 6) 0 0.7735 0.4086 8 17 ( 6324 1vsr_A) ( 3365 1knv_A) 0.6230 0.3332 8.6195 ( 0 1 10) 0 0.8718 0.4665 8 15 ( 6324 1vsr_A) ( 4182 1na6_A) 0.4999 0.3636 5.7916 ( 0 1 6) 0 0.6246 0.4545 8 11 ( 6324 1vsr_A) ( 5514 1r0v_A) 0.4999 0.5712 5.8006 ( 0 0 6) 0 0.4999 0.5712 8 7 ( 6324 1vsr_A) ( 5516 1r0v_A) 0.4999 0.4999 4.5792 ( 0 0 6) 0 0.4999 0.4999 8 8 ( 6324 1vsr_A) ( 5795 1sdo_A) 0.4992 0.2666 9.1168 ( 0 1 6) 0 0.4992 0.4157 8 15 ( 6324 1vsr_A) ( 5867 1sx5_A) 0.3665 0.2412 12.5026 ( 1 4 6) 0 0.4585 0.3016 8 16 ( 6324 1vsr_A) ( 6324 1vsr_A) 1.0000 1.0000 0.0000 ( 0 17 28) 0 1.0000 1.0000 8 8 ( 6324 1vsr_A) ( 6453 2fok_A) 0.8653 0.5820 8.4457 ( 0 9 21) 0 0.8653 0.5820 8 12 ( 6324 1vsr_A) ( 6592 3pvi_A) 0.0999 0.0999 7.9197 ( 1 1 6) 0 0.1499 0.1499 8 8 -------------------------------------------------------------------------------------------------------------------------