------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 62 1a79_A) ( 62 1a79_A) 1.0000 1.0000 0.0000 ( 0 18 21) 0 1.0000 1.0000 7 7 ( 62 1a79_A) ( 222 1avq_A) 0.8569 0.4286 3.3925 ( 0 11 15) 0 0.8569 0.4286 7 14 ( 62 1a79_A) ( 250 1azo ) 0.5714 0.2857 4.2642 ( 0 5 6) 0 0.5714 0.2857 7 14 ( 62 1a79_A) ( 336 1bam ) 0.5710 0.2857 6.6155 ( 0 1 6) 0 0.8560 0.4285 7 14 ( 62 1a79_A) ( 581 1cfr ) 0.5708 0.2500 7.3526 ( 0 3 6) 0 0.7140 0.3125 7 16 ( 62 1a79_A) ( 621 1ckq_A) 0.3781 0.2287 13.4034 ( 1 4 6) 0 0.5709 0.2353 7 17 ( 62 1a79_A) ( 717 1d02_A) 0.8568 0.4615 3.7022 ( 0 8 15) 0 0.8568 0.4615 7 13 ( 62 1a79_A) ( 788 1dc1_A) 0.8438 0.2857 9.4107 ( 0 9 15) 0 0.8438 0.3021 7 21 ( 62 1a79_A) ( 825 1dfm_A) 0.8569 0.3529 3.5655 ( 0 9 15) 0 0.9989 0.4118 7 17 ( 62 1a79_A) ( 886 1dmu_A) 0.5684 0.1905 10.7587 ( 0 4 6) 0 0.5684 0.1905 7 21 ( 62 1a79_A) ( 982 1dzf_A) 0.5711 0.4000 5.8906 ( 0 1 6) 0 0.5711 0.4000 7 10 ( 62 1a79_A) ( 1276 1ev7_A) 0.7140 0.2778 4.2950 ( 0 7 10) 0 0.7140 0.3186 7 18 ( 62 1a79_A) ( 1367 1f1z_A) 0.8568 0.5454 3.5952 ( 0 8 15) 0 0.8568 0.5454 7 11 ( 62 1a79_A) ( 1512 1fiu_A) 0.5703 0.2222 8.4335 ( 0 4 6) 0 0.5705 0.3085 7 18 ( 62 1a79_A) ( 1665 1fzr_A) 0.5713 0.4444 4.8649 ( 0 2 6) 0 0.5713 0.4444 7 9 ( 62 1a79_A) ( 1808 1gef_A) 0.9997 0.7777 3.0230 ( 0 15 21) 0 0.9997 0.7777 7 9 ( 62 1a79_A) ( 2210 1hh1_A) 0.9991 0.7775 3.8993 ( 0 12 21) 0 0.9991 0.7775 7 9 ( 62 1a79_A) ( 2707 1j23_A) 0.5714 0.4000 1.7661 ( 0 4 6) 0 0.5714 0.4000 7 10 ( 62 1a79_A) ( 3258 1kc6_A) 0.9210 0.4106 7.1334 ( 1 13 21) 0 0.9210 0.4106 7 17 ( 62 1a79_A) ( 3365 1knv_A) 0.5709 0.2667 6.8101 ( 0 1 6) 0 0.7098 0.3332 7 15 ( 62 1a79_A) ( 4182 1na6_A) 0.5711 0.3636 6.0551 ( 0 2 6) 0 0.5713 0.3636 7 11 ( 62 1a79_A) ( 5514 1r0v_A) 0.9998 0.9998 2.7653 ( 0 17 21) 0 0.9998 0.9998 7 7 ( 62 1a79_A) ( 5516 1r0v_A) 0.9999 0.8750 1.5808 ( 0 17 21) 0 0.9999 0.8750 7 8 ( 62 1a79_A) ( 5795 1sdo_A) 0.5709 0.2667 7.0010 ( 0 2 6) 0 0.7126 0.3590 7 15 ( 62 1a79_A) ( 5867 1sx5_A) 0.8555 0.3750 5.5447 ( 0 10 15) 0 0.9926 0.4374 7 16 ( 62 1a79_A) ( 6324 1vsr_A) 0.5713 0.4999 4.9138 ( 0 0 6) 0 0.5713 0.4999 7 8 ( 62 1a79_A) ( 6453 2fok_A) 0.5712 0.3333 5.5623 ( 0 2 6) 0 0.5712 0.3333 7 12 ( 62 1a79_A) ( 6592 3pvi_A) 0.7135 0.6246 5.6809 ( 0 5 10) 0 0.7135 0.6246 7 8 -------------------------------------------------------------------------------------------------------------------------