------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 621 1ckq_A) ( 62 1a79_A) 0.2287 0.3781 13.4034 ( 1 4 6) 0 0.2353 0.5709 17 7 ( 621 1ckq_A) ( 222 1avq_A) 0.2353 0.2857 8.7929 ( 0 1 6) 0 0.2353 0.2857 17 14 ( 621 1ckq_A) ( 250 1azo ) 0.2353 0.2857 9.6248 ( 0 3 6) 0 0.3508 0.4230 17 14 ( 621 1ckq_A) ( 336 1bam ) 0.2353 0.2857 3.8657 ( 0 2 6) 0 0.2353 0.2857 17 14 ( 621 1ckq_A) ( 581 1cfr ) 0.5760 0.6086 7.6282 ( 2 22 45) 0 0.5760 0.6086 17 16 ( 621 1ckq_A) ( 621 1ckq_A) 1.0000 1.0000 0.0000 ( 0 96 136) 0 1.0000 1.0000 17 17 ( 621 1ckq_A) ( 717 1d02_A) 0.5882 0.7690 3.7724 ( 0 15 45) 0 0.5882 0.7690 17 13 ( 621 1ckq_A) ( 788 1dc1_A) 0.5293 0.4285 5.3981 ( 0 13 36) 0 0.5879 0.4761 17 21 ( 621 1ckq_A) ( 825 1dfm_A) 0.2940 0.2940 10.9527 ( 0 4 10) 0 0.4072 0.4072 17 17 ( 621 1ckq_A) ( 886 1dmu_A) 0.2758 0.2311 9.4251 ( 2 8 10) 0 0.3541 0.3338 17 21 ( 621 1ckq_A) ( 982 1dzf_A) 0.2941 0.4997 6.8276 ( 0 1 10) 0 0.4115 0.6965 17 10 ( 621 1ckq_A) ( 1276 1ev7_A) 0.2353 0.2222 8.0512 ( 0 1 6) 0 0.3410 0.3314 17 18 ( 621 1ckq_A) ( 1367 1f1z_A) 0.3529 0.5454 4.8211 ( 0 4 15) 0 0.3529 0.5454 17 11 ( 621 1ckq_A) ( 1512 1fiu_A) 0.5872 0.5548 4.6005 ( 1 21 45) 0 0.5872 0.5548 17 18 ( 621 1ckq_A) ( 1665 1fzr_A) 0.2941 0.5555 3.8831 ( 0 2 10) 0 0.2941 0.5555 17 9 ( 621 1ckq_A) ( 1808 1gef_A) 0.2353 0.4438 9.9196 ( 0 3 6) 0 0.2940 0.5519 17 9 ( 621 1ckq_A) ( 2210 1hh1_A) 0.2941 0.5547 8.0170 ( 0 3 10) 0 0.2941 0.5552 17 9 ( 621 1ckq_A) ( 2707 1j23_A) 0.2353 0.4000 5.8970 ( 0 0 6) 0 0.4595 0.5463 17 10 ( 621 1ckq_A) ( 3258 1kc6_A) 0.4316 0.4316 8.5214 ( 2 10 36) 0 0.4316 0.4316 17 17 ( 621 1ckq_A) ( 3365 1knv_A) 0.5864 0.6633 7.2481 ( 1 20 45) 0 0.5864 0.6633 17 15 ( 621 1ckq_A) ( 4182 1na6_A) 0.2287 0.3189 12.6914 ( 1 4 6) 0 0.2287 0.3189 17 11 ( 621 1ckq_A) ( 5514 1r0v_A) 0.2286 0.3773 15.5620 ( 1 4 6) 0 0.2353 0.5695 17 7 ( 621 1ckq_A) ( 5516 1r0v_A) 0.2352 0.4959 13.6651 ( 0 3 6) 0 0.2352 0.4959 17 8 ( 621 1ckq_A) ( 5795 1sdo_A) 0.4116 0.4664 7.2072 ( 0 1 21) 0 0.4116 0.4664 17 15 ( 621 1ckq_A) ( 5867 1sx5_A) 0.2941 0.3125 6.5340 ( 0 1 10) 0 0.2941 0.3125 17 16 ( 621 1ckq_A) ( 6324 1vsr_A) 0.2353 0.4999 4.8113 ( 0 1 6) 0 0.4117 0.8740 17 8 ( 621 1ckq_A) ( 6453 2fok_A) 0.5845 0.8132 5.6787 ( 1 15 45) 0 0.5845 0.8132 17 12 ( 621 1ckq_A) ( 6592 3pvi_A) 0.2324 0.4179 15.0067 ( 1 5 6) 0 0.2497 0.4179 17 8 -------------------------------------------------------------------------------------------------------------------------