------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5867 1sx5_A) ( 62 1a79_A) 0.3750 0.8555 5.5447 ( 0 10 15) 0 0.4374 0.9926 16 7 ( 5867 1sx5_A) ( 222 1avq_A) 0.2500 0.2856 10.5214 ( 0 4 6) 0 0.2500 0.2857 16 14 ( 5867 1sx5_A) ( 250 1azo ) 0.2763 0.2972 6.3935 ( 2 7 10) 0 0.4998 0.5711 16 14 ( 5867 1sx5_A) ( 336 1bam ) 0.3125 0.3571 5.6522 ( 0 3 10) 0 0.3125 0.3571 16 14 ( 5867 1sx5_A) ( 581 1cfr ) 0.2752 0.2752 10.6355 ( 2 6 15) 0 0.3117 0.3117 16 16 ( 5867 1sx5_A) ( 621 1ckq_A) 0.3125 0.2941 6.5340 ( 0 1 10) 0 0.3125 0.2941 16 17 ( 5867 1sx5_A) ( 717 1d02_A) 0.3670 0.3838 7.0040 ( 3 12 28) 0 0.4051 0.4343 16 13 ( 5867 1sx5_A) ( 788 1dc1_A) 0.2500 0.1905 7.3517 ( 0 2 6) 0 0.2634 0.2575 16 21 ( 5867 1sx5_A) ( 825 1dfm_A) 0.3125 0.2941 5.2350 ( 0 5 10) 0 0.3125 0.3034 16 17 ( 5867 1sx5_A) ( 886 1dmu_A) 0.4999 0.3809 5.0020 ( 0 13 28) 0 0.5718 0.4605 16 21 ( 5867 1sx5_A) ( 982 1dzf_A) 0.1835 0.1970 9.6139 ( 2 4 6) 0 0.2499 0.3987 16 10 ( 5867 1sx5_A) ( 1276 1ev7_A) 0.2499 0.2222 11.3260 ( 0 5 6) 0 0.3897 0.3597 16 18 ( 5867 1sx5_A) ( 1367 1f1z_A) 0.2500 0.3636 6.6484 ( 0 4 6) 0 0.2500 0.3636 16 11 ( 5867 1sx5_A) ( 1512 1fiu_A) 0.2581 0.2500 6.9173 ( 4 11 15) 0 0.3039 0.2869 16 18 ( 5867 1sx5_A) ( 1665 1fzr_A) 0.2102 0.2441 9.6989 ( 2 5 6) 0 0.2102 0.2441 16 9 ( 5867 1sx5_A) ( 1808 1gef_A) 0.4999 0.8878 4.7467 ( 0 22 28) 0 0.4999 0.8878 16 9 ( 5867 1sx5_A) ( 2210 1hh1_A) 0.3125 0.5554 5.4925 ( 0 5 10) 0 0.3317 0.5554 16 9 ( 5867 1sx5_A) ( 2707 1j23_A) 0.2500 0.3997 9.5887 ( 0 4 6) 0 0.2572 0.3999 16 10 ( 5867 1sx5_A) ( 3258 1kc6_A) 0.6755 0.6381 5.0149 ( 3 40 55) 0 0.6755 0.6381 16 17 ( 5867 1sx5_A) ( 3365 1knv_A) 0.2500 0.2666 9.1580 ( 0 2 6) 0 0.3747 0.3996 16 15 ( 5867 1sx5_A) ( 4182 1na6_A) 0.2413 0.3192 7.7460 ( 1 4 6) 0 0.2413 0.3192 16 11 ( 5867 1sx5_A) ( 5514 1r0v_A) 0.3750 0.8549 5.9482 ( 0 10 15) 0 0.4363 0.9347 16 7 ( 5867 1sx5_A) ( 5516 1r0v_A) 0.3750 0.7485 6.3539 ( 0 10 15) 0 0.4373 0.8702 16 8 ( 5867 1sx5_A) ( 5795 1sdo_A) 0.2500 0.2667 5.7051 ( 0 5 6) 0 0.3746 0.3994 16 15 ( 5867 1sx5_A) ( 5867 1sx5_A) 1.0000 1.0000 0.0000 ( 0 100 120) 0 1.0000 1.0000 16 16 ( 5867 1sx5_A) ( 6324 1vsr_A) 0.2412 0.3665 12.5026 ( 1 4 6) 0 0.3016 0.4585 16 8 ( 5867 1sx5_A) ( 6453 2fok_A) 0.2499 0.3330 12.0221 ( 0 4 6) 0 0.2690 0.3330 16 12 ( 5867 1sx5_A) ( 6592 3pvi_A) 0.2500 0.4999 5.2142 ( 0 3 6) 0 0.3125 0.6248 16 8 -------------------------------------------------------------------------------------------------------------------------