------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [581, 62]: Comparing 1cfr and 1a79_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 17 (6 H + 11 S) secondary structure elements in 1a79_A, of which 7 satisfy the size requirements. 4.00017 [ 1.75208] ((13 . 9) (14 . 13) (15 . 15) (17 . 16)) 7.353 {0/3:6} B:0 4.00046 [ 1.75544] ((13 . 9) (14 . 12) (15 . 15) (17 . 16)) 9.360 {0/3:6} B:0 6.87292 [ 6.67459] ((12 . 10) (14 . 13) (15 . 15) (17 . 17)) 6.384 {2/3:6} B:0 6.87294 [ 6.67461] ((13 . 9) (14 . 13) (15 . 15) (17 . 17)) 7.660 {2/3:6} B:0 3.20005 [ 1.40060] ((12 . 10) (14 . 13) (15 . 15) (17 . 16) (18 . 9)) 4.564 {0/5:10} B:1 SIMILARITY (1/min{score1}): 0.3125 [and 1/min{score2}: 0.7140] [581, 222]: Comparing 1cfr and 1avq_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 19 (11 H + 8 S) secondary structure elements in 1avq_A, of which 14 satisfy the size requirements. 4.00026 [ 3.50038] ((11 . 7) (14 . 12) (15 . 15) (17 . 16)) 8.088 {0/1:6} B:0 4.00075 [ 3.50112] ((8 . 3) (13 . 7) (14 . 12) (15 . 13)) 10.604 {0/4:6} B:0 4.00076 [ 3.50113] ((8 . 1) (11 . 6) (13 . 7) (15 . 13)) 10.614 {0/2:6} B:0 4.06237 [ 3.59164] ((3 . 7) (5 . 13) (6 . 16) (10 . 18)) 12.259 {1/5:6} B:0 4.14482 [ 3.70876] ((8 . 3) (14 . 12) (15 . 13) (17 . 16)) 8.325 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.3250 [and 1/min{score2}: 0.3473] [581, 250]: Comparing 1cfr and 1azo, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 17 (9 H + 8 S) secondary structure elements in 1azo, of which 14 satisfy the size requirements. 3.20461 [ 2.80687] ((3 . 1) (4 . 2) (6 . 6) (12 . 13) (13 . 17)) 14.114 {0/8:10} B:0 4.00013 [ 3.50020] ((1 . 5) (2 . 6) (4 . 7) (5 . 11)) 6.884 {0/4:6} B:0 4.00032 [ 3.50048] ((3 . 1) (4 . 2) (11 . 11) (12 . 13)) 8.580 {0/6:6} B:0 4.00038 [ 3.50057] ((8 . 2) (12 . 6) (13 . 7) (17 . 13)) 8.956 {0/5:6} B:0 4.00050 [ 3.50075] ((8 . 1) (12 . 5) (14 . 8) (18 . 11)) 9.587 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.3121 [and 1/min{score2}: 0.3563] [581, 336]: Comparing 1cfr and 1bam, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 15 (7 H + 8 S) secondary structure elements in 1bam, of which 14 satisfy the size requirements. 4.00005 [ 3.50007] ((12 . 8) (13 . 9) (14 . 10) (15 . 12)) 5.338 {0/0:6} B:0 4.00007 [ 3.50011] ((11 . 5) (13 . 9) (14 . 10) (17 . 13)) 5.943 {0/1:6} B:0 4.00013 [ 3.50020] ((11 . 5) (12 . 8) (13 . 9) (14 . 10)) 6.850 {0/0:6} B:0 4.00032 [ 3.50047] ((12 . 8) (13 . 9) (15 . 12) (18 . 15)) 8.532 {0/2:6} B:0 4.00037 [ 3.50055] ((9 . 1) (13 . 5) (15 . 9) (17 . 10)) 8.873 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4993 [and 1/min{score2}: 0.5701] [581, 581]: Comparing 1cfr and 1cfr, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18)) 0.000 {0/94:120} B:0 3.88723 [ 3.88723] ((4 . 3) (8 . 8) (13 . 13) (15 . 15) (18 . 18)) 5.475 {3/9:10} B:0 4.00022 [ 4.00022] ((14 . 12) (15 . 13) (17 . 14) (18 . 15)) 7.812 {0/1:6} B:0 4.00022 [ 4.00022] ((12 . 14) (13 . 15) (14 . 17) (15 . 18)) 7.812 {0/1:6} B:0 4.00027 [ 4.00027] ((10 . 4) (11 . 5) (12 . 6) (17 . 12)) 8.179 {0/2:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [581, 621]: Comparing 1cfr and 1ckq_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1ckq_A, of which 17 satisfy the size requirements. 1.64307 [ 1.73621] ((4 . 1) (5 . 2) (6 . 3) (9 . 7) (12 . 8) (13 . 10) (14 . 11) (15 . 14) (17 . 17) (18 . 18)) 7.628 {2/22:45} B:0 1.78293 [ 1.89319] ((4 . 1) (5 . 2) (6 . 3) (9 . 7) (12 . 8) (13 . 10) (14 . 11) (17 . 17) (18 . 18)) 7.708 {1/20:36} B:0 1.78385 [ 1.89396] ((5 . 2) (6 . 3) (9 . 7) (12 . 8) (13 . 10) (14 . 11) (15 . 14) (17 . 17) (18 . 18)) 5.812 {1/17:36} B:0 2.00051 [ 2.12543] ((5 . 2) (6 . 3) (9 . 7) (12 . 8) (13 . 10) (14 . 11) (17 . 17) (18 . 18)) 5.723 {0/15:28} B:0 2.00982 [ 2.13320] ((4 . 1) (5 . 2) (6 . 3) (9 . 7) (12 . 8) (13 . 10) (14 . 11) (18 . 18)) 7.795 {1/14:28} B:0 SIMILARITY (1/min{score1}): 0.6086 [and 1/min{score2}: 0.5760] [581, 717]: Comparing 1cfr and 1d02_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 16 (11 H + 5 S) secondary structure elements in 1d02_A, of which 13 satisfy the size requirements. 1.77838 [ 1.44556] ((5 . 2) (6 . 3) (9 . 6) (12 . 7) (13 . 9) (14 . 11) (15 . 13) (17 . 14) (18 . 15)) 5.455 {0/19:36} B:0 1.77851 [ 1.44580] ((5 . 2) (6 . 3) (9 . 6) (12 . 7) (13 . 10) (14 . 11) (15 . 13) (17 . 14) (18 . 15)) 5.723 {0/20:36} B:0 3.20025 [ 2.60046] ((5 . 2) (6 . 3) (12 . 11) (13 . 13) (14 . 14)) 6.777 {0/6:10} B:0 3.20038 [ 2.60071] ((6 . 3) (9 . 6) (13 . 10) (14 . 14) (18 . 16)) 7.569 {0/6:10} B:0 3.20066 [ 2.60123] ((6 . 3) (9 . 6) (13 . 10) (14 . 14) (15 . 15)) 8.686 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5829 [and 1/min{score2}: 0.6918] [581, 788]: Comparing 1cfr and 1dc1_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 23 (15 H + 8 S) secondary structure elements in 1dc1_A, of which 21 satisfy the size requirements. 1.62303 [ 2.11033] ((4 . 3) (5 . 9) (6 . 15) (9 . 16) (12 . 18) (13 . 19) (14 . 20) (15 . 21) (17 . 22) (18 . 23)) 6.939 {2/26:45} B:0 3.20014 [ 4.20006] ((4 . 3) (12 . 15) (14 . 18) (15 . 19) (17 . 20)) 5.913 {0/6:10} B:0 3.20031 [ 4.20014] ((11 . 13) (12 . 15) (14 . 18) (15 . 19) (17 . 20)) 7.168 {0/3:10} B:0 3.20561 [ 4.20248] ((5 . 10) (8 . 13) (9 . 16) (13 . 21) (14 . 22)) 14.823 {0/7:10} B:0 3.31959 [ 4.25485] ((3 . 1) (4 . 3) (14 . 18) (15 . 19) (17 . 20)) 13.933 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.6161 [and 1/min{score2}: 0.4739] [581, 825]: Comparing 1cfr and 1dfm_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 17 (6 H + 11 S) secondary structure elements in 1dfm_A, of which 17 satisfy the size requirements. 3.20002 [ 3.40002] ((12 . 10) (13 . 11) (14 . 12) (15 . 13) (17 . 14)) 3.806 {0/4:10} B:0 3.20078 [ 3.40065] ((9 . 1) (13 . 6) (14 . 10) (15 . 11) (17 . 12)) 9.057 {0/5:10} B:0 4.00017 [ 4.25014] ((14 . 10) (15 . 11) (17 . 12) (18 . 13)) 7.317 {0/1:6} B:0 4.00024 [ 4.25020] ((11 . 2) (13 . 6) (17 . 10) (18 . 11)) 7.928 {0/0:6} B:0 4.00026 [ 4.25022] ((9 . 1) (13 . 11) (14 . 12) (18 . 13)) 8.118 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.3777 [and 1/min{score2}: 0.3726] [581, 886]: Comparing 1cfr and 1dmu_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 24 (12 H + 12 S) secondary structure elements in 1dmu_A, of which 21 satisfy the size requirements. 4.00010 [ 5.25004] ((1 . 6) (2 . 7) (3 . 8) (12 . 22)) 6.394 {0/5:6} B:0 4.00013 [ 5.25006] ((5 . 5) (6 . 9) (12 . 15) (17 . 24)) 6.887 {0/4:6} B:0 4.00031 [ 5.25014] ((1 . 7) (2 . 9) (9 . 21) (10 . 23)) 8.482 {0/0:6} B:0 4.00037 [ 5.25016] ((1 . 6) (2 . 7) (3 . 8) (9 . 17)) 8.863 {0/5:6} B:0 4.00040 [ 5.25018] ((4 . 3) (5 . 5) (12 . 15) (17 . 22)) 9.047 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.2524 [and 1/min{score2}: 0.2403] [581, 982]: Comparing 1cfr and 1dzf_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 22 (12 H + 10 S) secondary structure elements in 1dzf_A, of which 10 satisfy the size requirements. 3.20018 [ 2.00073] ((5 . 1) (9 . 5) (12 . 10) (13 . 12) (14 . 13)) 6.251 {0/2:10} B:0 4.00006 [ 2.50024] ((11 . 2) (14 . 7) (15 . 9) (17 . 13)) 5.621 {0/1:6} B:0 4.00008 [ 2.50032] ((11 . 1) (14 . 7) (15 . 9) (17 . 10)) 6.027 {0/0:6} B:0 4.00009 [ 2.50035] ((11 . 1) (14 . 7) (15 . 9) (17 . 13)) 6.170 {0/1:6} B:0 4.00046 [ 2.50189] ((5 . 1) (8 . 3) (9 . 5) (12 . 10)) 9.381 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5490 [and 1/min{score2}: 0.7920] [581, 1276]: Comparing 1cfr and 1ev7_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 25 (14 H + 11 S) secondary structure elements in 1ev7_A, of which 18 satisfy the size requirements. 3.07818 [ 3.31121] ((3 . 17) (4 . 19) (5 . 20) (12 . 22) (14 . 23) (17 . 25)) 9.937 {3/12:15} B:0 4.00011 [ 4.50007] ((4 . 3) (5 . 5) (6 . 8) (9 . 11)) 6.488 {0/3:6} B:0 4.00021 [ 4.50015] ((3 . 3) (4 . 5) (10 . 16) (11 . 17)) 7.712 {0/5:6} B:0 4.00083 [ 4.50058] ((1 . 7) (2 . 8) (8 . 17) (12 . 23)) 10.859 {0/6:6} B:0 4.00203 [ 4.50142] ((4 . 2) (5 . 5) (11 . 13) (15 . 20)) 13.582 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3249 [and 1/min{score2}: 0.3020] [581, 1367]: Comparing 1cfr and 1f1z_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 24 (14 H + 10 S) secondary structure elements in 1f1z_A, of which 11 satisfy the size requirements. 2.28602 [ 1.57236] ((5 . 6) (6 . 7) (8 . 8) (9 . 11) (12 . 12) (13 . 14) (14 . 15)) 5.543 {0/11:21} B:0 2.66678 [ 1.83368] ((5 . 6) (6 . 7) (9 . 11) (12 . 12) (13 . 14) (14 . 15)) 4.871 {0/6:15} B:0 2.66683 [ 1.83383] ((5 . 6) (6 . 7) (8 . 8) (9 . 11) (12 . 12) (14 . 15)) 5.334 {0/8:15} B:0 3.20009 [ 2.20027] ((9 . 4) (12 . 7) (14 . 12) (15 . 14) (17 . 15)) 5.220 {0/6:10} B:0 3.20010 [ 2.20032] ((5 . 6) (6 . 7) (8 . 8) (9 . 11) (12 . 15)) 5.465 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.4375 [and 1/min{score2}: 0.6361] [581, 1512]: Comparing 1cfr and 1fiu_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 18 (12 H + 6 S) secondary structure elements in 1fiu_A, of which 18 satisfy the size requirements. 1.56606 [ 1.71787] ((4 . 1) (5 . 3) (6 . 4) (8 . 6) (9 . 8) (12 . 10) (13 . 11) (14 . 12) (15 . 13) (17 . 14) (18 . 18)) 5.570 {4/36:55} B:0 1.56614 [ 1.71793] ((4 . 1) (5 . 3) (6 . 4) (8 . 6) (9 . 8) (12 . 10) (13 . 11) (14 . 12) (15 . 13) (17 . 17) (18 . 18)) 5.675 {4/36:55} B:0 2.28581 [ 2.57149] ((5 . 3) (6 . 4) (9 . 8) (12 . 10) (13 . 11) (14 . 14) (18 . 18)) 4.128 {0/10:21} B:0 2.66712 [ 3.00032] ((5 . 3) (6 . 4) (9 . 8) (13 . 13) (14 . 14) (18 . 18)) 6.905 {0/9:15} B:0 2.66721 [ 3.00038] ((5 . 3) (6 . 4) (9 . 8) (12 . 10) (13 . 13) (18 . 18)) 7.221 {0/8:15} B:0 SIMILARITY (1/min{score1}): 0.6675 [and 1/min{score2}: 0.5997] [581, 1665]: Comparing 1cfr and 1fzr_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1fzr_A, of which 9 satisfy the size requirements. 4.00011 [ 2.25061] ((14 . 6) (15 . 7) (17 . 8) (18 . 9)) 6.536 {0/0:6} B:0 4.41632 [ 3.49980] ((8 . 1) (11 . 7) (12 . 8) (14 . 10)) 15.767 {1/3:6} B:0 4.41663 [ 3.50043] ((8 . 1) (12 . 6) (13 . 9) (14 . 10)) 16.198 {1/3:6} B:0 5.09822 [ 5.01011] ((12 . 6) (13 . 7) (14 . 8) (15 . 9) (17 . 10) (18 . 11)) 4.984 {2/4:15} B:0 5.19773 [ 5.02092] ((9 . 6) (12 . 8) (13 . 9) (14 . 10) (18 . 11)) 6.522 {1/2:10} B:0 SIMILARITY (1/min{score1}): 0.3125 [and 1/min{score2}: 0.5551] [581, 1808]: Comparing 1cfr and 1gef_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 13 (6 H + 7 S) secondary structure elements in 1gef_A, of which 9 satisfy the size requirements. 4.00017 [ 2.25097] ((13 . 1) (14 . 5) (15 . 7) (17 . 8)) 7.335 {0/3:6} B:0 6.87294 [ 6.68823] ((13 . 1) (14 . 5) (15 . 7) (17 . 9)) 7.816 {2/3:6} B:0 3.20059 [ 1.80332] ((12 . 2) (13 . 1) (14 . 5) (15 . 7) (17 . 8)) 8.445 {0/5:10} B:1 4.00020 [ 2.25112] ((11 . 1) (12 . 2) (14 . 8) (15 . 7)) 7.614 {0/1:6} B:1 4.00048 [ 2.25268] ((13 . 1) (14 . 4) (17 . 8) (18 . 7)) 9.465 {0/1:6} B:1 SIMILARITY (1/min{score1}): 0.3124 [and 1/min{score2}: 0.5545] [581, 2210]: Comparing 1cfr and 1hh1_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 13 (4 H + 9 S) secondary structure elements in 1hh1_A, of which 9 satisfy the size requirements. 3.77071 [ 3.65055] ((5 . 1) (6 . 2) (9 . 3) (12 . 4) (14 . 8) (17 . 9) (18 . 13)) 5.281 {4/11:21} B:0 3.91466 [ 3.85323] ((5 . 1) (6 . 2) (9 . 3) (12 . 4) (13 . 7) (14 . 8) (17 . 9) (18 . 13)) 5.421 {5/13:28} B:0 4.00017 [ 2.25096] ((12 . 2) (13 . 7) (14 . 8) (18 . 13)) 7.327 {0/1:6} B:0 4.00018 [ 2.25099] ((13 . 1) (14 . 4) (15 . 7) (17 . 8)) 7.372 {0/2:6} B:0 4.00018 [ 2.25103] ((11 . 1) (12 . 2) (15 . 7) (18 . 13)) 7.456 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.3124 [and 1/min{score2}: 0.5546] [581, 2707]: Comparing 1cfr and 1j23_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 12 (6 H + 6 S) secondary structure elements in 1j23_A, of which 10 satisfy the size requirements. 3.20043 [ 2.00175] ((12 . 1) (14 . 6) (15 . 8) (17 . 9) (18 . 10)) 7.788 {0/4:10} B:0 4.00059 [ 2.50241] ((12 . 9) (13 . 10) (14 . 11) (15 . 12)) 9.968 {0/0:6} B:0 4.14534 [ 2.97513] ((5 . 3) (6 . 4) (8 . 7) (13 . 12)) 10.987 {1/4:6} B:0 4.14551 [ 2.97559] ((6 . 4) (11 . 10) (12 . 11) (13 . 12)) 11.539 {1/4:6} B:0 4.41495 [ 3.57308] ((5 . 3) (6 . 4) (9 . 9) (10 . 10)) 13.276 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4983 [and 1/min{score2}: 0.7834] [581, 3258]: Comparing 1cfr and 1kc6_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 21 (12 H + 9 S) secondary structure elements in 1kc6_A, of which 17 satisfy the size requirements. 4.00007 [ 4.25006] ((5 . 3) (6 . 4) (9 . 9) (12 . 13)) 5.891 {0/3:6} B:0 4.00043 [ 4.25036] ((6 . 2) (13 . 5) (14 . 10) (17 . 13)) 9.198 {0/4:6} B:0 4.00056 [ 4.25047] ((6 . 2) (12 . 10) (14 . 13) (17 . 18)) 9.854 {0/4:6} B:0 4.00060 [ 4.25050] ((3 . 1) (4 . 3) (8 . 8) (11 . 12)) 10.023 {0/4:6} B:0 4.00081 [ 4.25067] ((4 . 1) (5 . 3) (12 . 13) (14 . 18)) 10.792 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4435 [and 1/min{score2}: 0.4264] [581, 3365]: Comparing 1cfr and 1knv_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 21 (14 H + 7 S) secondary structure elements in 1knv_A, of which 15 satisfy the size requirements. 1.06676 [ 1.00011] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 9) (9 . 10) (11 . 13) (12 . 15) (13 . 16) (14 . 17) (15 . 18) (17 . 20) (18 . 21)) 1.735 {1/76:105} B:0 1.14296 [ 1.07156] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 9) (9 . 10) (11 . 13) (12 . 15) (13 . 16) (14 . 17) (17 . 20) (18 . 21)) 1.756 {1/67:91} B:0 3.01292 [ 2.99193] ((1 . 2) (2 . 3) (3 . 5) (5 . 6) (6 . 7) (9 . 10) (11 . 13) (12 . 15) (18 . 16)) 7.475 {7/24:36} B:0 4.00019 [ 3.75023] ((14 . 15) (15 . 16) (17 . 17) (18 . 18)) 7.473 {0/0:6} B:0 4.00022 [ 3.75027] ((12 . 17) (13 . 18) (14 . 20) (15 . 21)) 7.833 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.9374 [and 1/min{score2}: 0.9999] [581, 4182]: Comparing 1cfr and 1na6_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 30 (20 H + 10 S) secondary structure elements in 1na6_A, of which 11 satisfy the size requirements. 3.63283 [ 3.40804] ((10 . 19) (11 . 20) (12 . 23) (14 . 25) (15 . 26) (18 . 30)) 9.928 {1/3:15} B:0 4.00008 [ 2.75024] ((13 . 21) (14 . 23) (17 . 25) (18 . 26)) 6.045 {0/1:6} B:0 4.00027 [ 2.75084] ((8 . 19) (14 . 25) (15 . 26) (18 . 30)) 8.216 {0/3:6} B:0 4.00041 [ 2.75125] ((10 . 19) (11 . 20) (14 . 23) (15 . 26)) 9.094 {0/1:6} B:0 4.00062 [ 2.75190] ((5 . 18) (12 . 23) (13 . 26) (15 . 30)) 10.095 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3675 [and 1/min{score2}: 0.5034] [581, 5514]: Comparing 1cfr and 1r0v_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 24 (9 H + 15 S) secondary structure elements in 1r0v_A, of which 7 satisfy the size requirements. 4.00043 [ 1.75505] ((13 . 1) (14 . 2) (15 . 5) (17 . 6)) 9.190 {0/3:6} B:0 6.87293 [ 6.67460] ((13 . 1) (14 . 4) (15 . 5) (17 . 7)) 6.995 {2/3:6} B:0 3.20068 [ 1.40808] ((12 . 2) (13 . 1) (14 . 3) (15 . 5) (17 . 4)) 8.751 {0/4:10} B:2 SIMILARITY (1/min{score1}): 0.3124 [and 1/min{score2}: 0.7102] [581, 5516]: Comparing 1cfr and 1r0v_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 24 (9 H + 15 S) secondary structure elements in 1r0v_A, of which 8 satisfy the size requirements. 4.00009 [ 2.00073] ((12 . 17) (13 . 20) (14 . 21) (15 . 22)) 6.252 {0/2:6} B:0 4.00022 [ 2.00176] ((13 . 16) (14 . 21) (15 . 22) (17 . 23)) 7.792 {0/3:6} B:0 5.19782 [ 5.01322] ((10 . 16) (12 . 17) (14 . 21) (15 . 22) (17 . 23)) 8.531 {3/6:10} B:0 6.87295 [ 6.68018] ((13 . 16) (14 . 21) (15 . 22) (17 . 24)) 8.016 {2/3:6} B:0 3.77076 [ 3.64532] ((6 . 17) (12 . 19) (13 . 20) (14 . 21) (15 . 22) (17 . 23) (18 . 16)) 6.238 {4/11:21} B:1 SIMILARITY (1/min{score1}): 0.3790 [and 1/min{score2}: 0.5000] [581, 5795]: Comparing 1cfr and 1sdo_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 16 (10 H + 6 S) secondary structure elements in 1sdo_A, of which 15 satisfy the size requirements. 3.20003 [ 3.00004] ((12 . 10) (13 . 12) (14 . 13) (15 . 15) (17 . 16)) 4.089 {0/4:10} B:0 3.20074 [ 3.00089] ((10 . 3) (14 . 10) (15 . 12) (17 . 13) (18 . 15)) 8.917 {0/1:10} B:0 4.00023 [ 3.75028] ((9 . 9) (12 . 13) (13 . 15) (14 . 16)) 7.865 {0/2:6} B:0 4.00025 [ 3.75030] ((10 . 3) (11 . 5) (14 . 10) (17 . 13)) 8.022 {0/0:6} B:0 4.00030 [ 3.75036] ((11 . 2) (13 . 5) (17 . 10) (18 . 11)) 8.417 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.3749 [and 1/min{score2}: 0.3998] [581, 5867]: Comparing 1cfr and 1sx5_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 18 (9 H + 9 S) secondary structure elements in 1sx5_A, of which 16 satisfy the size requirements. 3.63308 [ 3.63308] ((5 . 4) (6 . 6) (9 . 7) (12 . 10) (14 . 12) (18 . 15)) 10.635 {2/6:15} B:0 4.00011 [ 4.00011] ((4 . 1) (5 . 4) (6 . 5) (15 . 16)) 6.486 {0/3:6} B:0 4.00029 [ 4.00029] ((4 . 1) (5 . 4) (14 . 14) (15 . 16)) 8.375 {0/5:6} B:0 4.00038 [ 4.00038] ((10 . 1) (11 . 4) (14 . 7) (17 . 10)) 8.957 {0/0:6} B:0 4.00052 [ 4.00052] ((10 . 1) (11 . 4) (12 . 5) (17 . 10)) 9.664 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.3117 [and 1/min{score2}: 0.3117] [581, 6324]: Comparing 1cfr and 1vsr_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 11 (5 H + 6 S) secondary structure elements in 1vsr_A, of which 8 satisfy the size requirements. 3.20082 [ 1.60655] ((13 . 1) (14 . 5) (15 . 6) (17 . 7) (18 . 9)) 9.172 {0/3:10} B:0 4.00020 [ 2.00156] ((11 . 1) (15 . 6) (17 . 7) (18 . 9)) 7.565 {0/2:6} B:0 4.00057 [ 2.00455] ((12 . 5) (13 . 6) (14 . 7) (15 . 9)) 9.890 {0/2:6} B:0 5.44864 [ 5.03240] ((5 . 1) (10 . 6) (12 . 7) (13 . 9)) 12.365 {2/4:6} B:0 5.44881 [ 5.03262] ((10 . 1) (13 . 6) (14 . 7) (15 . 9)) 13.258 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.4374 [and 1/min{score2}: 0.8734] [581, 6453]: Comparing 1cfr and 2fok_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 44 (27 H + 17 S) secondary structure elements in 2fok_A, of which 12 satisfy the size requirements. 1.78230 [ 1.34396] ((5 . 33) (6 . 34) (9 . 35) (12 . 36) (13 . 37) (14 . 39) (15 . 40) (17 . 41) (18 . 42)) 4.578 {1/18:36} B:0 2.00012 [ 1.50028] ((5 . 33) (6 . 34) (9 . 35) (12 . 36) (13 . 37) (14 . 39) (15 . 40) (17 . 41)) 3.961 {0/16:28} B:0 2.01100 [ 1.52562] ((5 . 33) (6 . 34) (9 . 35) (12 . 36) (13 . 37) (14 . 39) (17 . 41) (18 . 42)) 4.193 {1/13:28} B:0 3.31737 [ 2.65152] ((8 . 32) (12 . 36) (13 . 37) (14 . 39) (15 . 40)) 11.329 {1/5:10} B:0 4.00002 [ 3.00004] ((9 . 35) (12 . 39) (13 . 40) (14 . 41)) 4.213 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5611 [and 1/min{score2}: 0.7441] [581, 6592]: Comparing 1cfr and 3pvi_A, based on their crossing files. There are 18 (11 H + 7 S) secondary structure elements in 1cfr, of which 16 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 3pvi_A, of which 8 satisfy the size requirements. 4.00014 [ 2.00110] ((6 . 4) (9 . 8) (10 . 9) (11 . 11)) 6.929 {0/5:6} B:0 4.00032 [ 2.00253] ((11 . 1) (13 . 2) (14 . 4) (17 . 7)) 8.541 {0/1:6} B:0 4.00048 [ 2.00381] ((11 . 2) (13 . 6) (14 . 7) (18 . 11)) 9.463 {0/0:6} B:0 4.00096 [ 2.00764] ((10 . 1) (11 . 2) (13 . 6) (18 . 11)) 11.268 {0/1:6} B:0 5.44816 [ 5.03180] ((5 . 2) (12 . 4) (14 . 7) (17 . 8)) 7.592 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.4020 [and 1/min{score2}: 0.5523] -------------------------------------------------------------------------------------------------------------------------