------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5516 1r0v_A) ( 62 1a79_A) 0.8750 0.9999 1.5808 ( 0 17 21) 0 0.8750 0.9999 8 7 ( 5516 1r0v_A) ( 222 1avq_A) 0.7499 0.4286 3.0795 ( 0 11 15) 0 0.7499 0.4286 8 14 ( 5516 1r0v_A) ( 250 1azo ) 0.4999 0.2857 4.5377 ( 0 5 6) 0 0.4999 0.2857 8 14 ( 5516 1r0v_A) ( 336 1bam ) 0.6247 0.3571 5.1836 ( 0 2 10) 0 0.6247 0.3571 8 14 ( 5516 1r0v_A) ( 581 1cfr ) 0.4998 0.2500 6.2524 ( 0 2 6) 0 0.5000 0.3790 8 16 ( 5516 1r0v_A) ( 621 1ckq_A) 0.4959 0.2352 13.6651 ( 0 3 6) 0 0.4959 0.2352 8 17 ( 5516 1r0v_A) ( 717 1d02_A) 0.4998 0.3077 6.6432 ( 0 0 6) 0 0.4998 0.3077 8 13 ( 5516 1r0v_A) ( 788 1dc1_A) 0.7441 0.2857 9.0460 ( 0 9 15) 0 0.7441 0.3021 8 21 ( 5516 1r0v_A) ( 825 1dfm_A) 0.4998 0.2353 6.6742 ( 0 2 6) 0 0.4998 0.2644 8 17 ( 5516 1r0v_A) ( 886 1dmu_A) 0.4989 0.1905 9.8697 ( 0 5 6) 0 0.4994 0.2064 8 21 ( 5516 1r0v_A) ( 982 1dzf_A) 0.4994 0.3998 8.3838 ( 0 2 6) 0 0.4994 0.3998 8 10 ( 5516 1r0v_A) ( 1276 1ev7_A) 0.6249 0.2778 4.2316 ( 0 7 10) 0 0.6249 0.2778 8 18 ( 5516 1r0v_A) ( 1367 1f1z_A) 0.7499 0.5454 3.0375 ( 0 9 15) 0 0.7499 0.5454 8 11 ( 5516 1r0v_A) ( 1512 1fiu_A) 0.4994 0.2222 8.2791 ( 0 5 6) 0 0.4995 0.2636 8 18 ( 5516 1r0v_A) ( 1665 1fzr_A) 0.4996 0.4442 7.6705 ( 0 1 6) 0 0.4996 0.4442 8 9 ( 5516 1r0v_A) ( 1808 1gef_A) 0.8747 0.7776 3.5035 ( 0 15 21) 0 0.8747 0.7776 8 9 ( 5516 1r0v_A) ( 2210 1hh1_A) 0.8746 0.7776 3.7520 ( 0 13 21) 0 0.8746 0.7776 8 9 ( 5516 1r0v_A) ( 2707 1j23_A) 0.4996 0.3999 7.4073 ( 0 3 6) 0 0.6250 0.5000 8 10 ( 5516 1r0v_A) ( 3258 1kc6_A) 0.8172 0.4102 7.7073 ( 1 12 21) 0 0.8172 0.4102 8 17 ( 5516 1r0v_A) ( 3365 1knv_A) 0.4998 0.2667 6.3174 ( 0 1 6) 0 0.6225 0.3332 8 15 ( 5516 1r0v_A) ( 4182 1na6_A) 0.4999 0.3636 5.3893 ( 0 2 6) 0 0.5000 0.3636 8 11 ( 5516 1r0v_A) ( 5514 1r0v_A) 0.8749 0.9998 2.6814 ( 0 17 21) 0 0.8749 0.9998 8 7 ( 5516 1r0v_A) ( 5516 1r0v_A) 1.0000 1.0000 0.0000 ( 0 25 28) 0 1.0000 1.0000 8 8 ( 5516 1r0v_A) ( 5795 1sdo_A) 0.5000 0.2667 3.8021 ( 0 2 6) 0 0.5000 0.2667 8 15 ( 5516 1r0v_A) ( 5867 1sx5_A) 0.7485 0.3750 6.3539 ( 0 10 15) 0 0.8702 0.4373 8 16 ( 5516 1r0v_A) ( 6324 1vsr_A) 0.4999 0.4999 4.5792 ( 0 0 6) 0 0.4999 0.4999 8 8 ( 5516 1r0v_A) ( 6453 2fok_A) 0.4997 0.3333 6.8640 ( 0 1 6) 0 0.4997 0.3966 8 12 ( 5516 1r0v_A) ( 6592 3pvi_A) 0.6245 0.6245 6.0702 ( 0 5 10) 0 0.6245 0.6245 8 8 -------------------------------------------------------------------------------------------------------------------------