------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 336 1bam ) ( 62 1a79_A) 0.2857 0.5710 6.6155 ( 0 1 6) 0 0.4285 0.8560 14 7 ( 336 1bam ) ( 222 1avq_A) 0.3561 0.3561 14.8806 ( 0 9 10) 0 0.3561 0.3561 14 14 ( 336 1bam ) ( 250 1azo ) 0.2857 0.2857 5.6588 ( 0 2 6) 0 0.3473 0.3473 14 14 ( 336 1bam ) ( 336 1bam ) 1.0000 1.0000 0.0000 ( 0 64 91) 0 1.0000 1.0000 14 14 ( 336 1bam ) ( 581 1cfr ) 0.2857 0.2500 5.3384 ( 0 0 6) 0 0.5701 0.4993 14 16 ( 336 1bam ) ( 621 1ckq_A) 0.2857 0.2353 3.8657 ( 0 2 6) 0 0.5706 0.4703 14 17 ( 336 1bam ) ( 717 1d02_A) 0.3571 0.3846 5.3151 ( 0 0 10) 0 0.5392 0.5708 14 13 ( 336 1bam ) ( 788 1dc1_A) 0.4278 0.2856 10.8038 ( 0 7 15) 0 0.4278 0.3019 14 21 ( 336 1bam ) ( 825 1dfm_A) 0.8480 0.7024 4.1423 ( 2 38 66) 0 0.8480 0.7024 14 17 ( 336 1bam ) ( 886 1dmu_A) 0.2857 0.1905 5.6439 ( 0 2 6) 0 0.3470 0.2696 14 21 ( 336 1bam ) ( 982 1dzf_A) 0.4999 0.6994 5.4376 ( 0 4 21) 0 0.4999 0.6994 14 10 ( 336 1bam ) ( 1276 1ev7_A) 0.2857 0.2222 9.3444 ( 0 1 6) 0 0.2857 0.2222 14 18 ( 336 1bam ) ( 1367 1f1z_A) 0.2857 0.3636 3.8281 ( 0 1 6) 0 0.2857 0.3636 14 11 ( 336 1bam ) ( 1512 1fiu_A) 0.3570 0.2777 8.6309 ( 0 4 10) 0 0.3687 0.3440 14 18 ( 336 1bam ) ( 1665 1fzr_A) 0.3571 0.5555 4.7095 ( 0 2 10) 0 0.4285 0.6662 14 9 ( 336 1bam ) ( 1808 1gef_A) 0.2227 0.2440 11.6007 ( 2 5 6) 0 0.2227 0.2440 14 9 ( 336 1bam ) ( 2210 1hh1_A) 0.3571 0.5555 3.9074 ( 0 2 10) 0 0.3571 0.5555 14 9 ( 336 1bam ) ( 2707 1j23_A) 0.3568 0.4984 10.8289 ( 0 4 10) 0 0.4981 0.6903 14 10 ( 336 1bam ) ( 3258 1kc6_A) 0.2857 0.2353 7.7555 ( 0 1 6) 0 0.2977 0.2951 14 17 ( 336 1bam ) ( 3365 1knv_A) 0.2857 0.2667 6.2631 ( 0 1 6) 0 0.5702 0.5324 14 15 ( 336 1bam ) ( 4182 1na6_A) 0.2857 0.3634 9.6500 ( 0 3 6) 0 0.3966 0.4255 14 11 ( 336 1bam ) ( 5514 1r0v_A) 0.2856 0.5692 9.9592 ( 0 1 6) 1 0.2856 0.5692 14 7 ( 336 1bam ) ( 5516 1r0v_A) 0.3571 0.6247 5.1836 ( 0 2 10) 0 0.3571 0.6247 14 8 ( 336 1bam ) ( 5795 1sdo_A) 0.7758 0.7263 5.7481 ( 2 34 55) 0 0.7758 0.7263 14 15 ( 336 1bam ) ( 5867 1sx5_A) 0.3571 0.3125 5.6522 ( 0 3 10) 0 0.3571 0.3248 14 16 ( 336 1bam ) ( 6324 1vsr_A) 0.3571 0.6238 7.5817 ( 0 4 10) 0 0.5082 0.6238 14 8 ( 336 1bam ) ( 6453 2fok_A) 0.3571 0.4167 2.6639 ( 0 4 10) 0 0.4284 0.4996 14 12 ( 336 1bam ) ( 6592 3pvi_A) 0.2856 0.4979 11.4978 ( 0 4 6) 0 0.2856 0.4979 14 8 -------------------------------------------------------------------------------------------------------------------------