------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3365 1knv_A) ( 62 1a79_A) 0.2667 0.5709 6.8101 ( 0 1 6) 0 0.3332 0.7098 15 7 ( 3365 1knv_A) ( 222 1avq_A) 0.2666 0.2857 8.0317 ( 0 3 6) 0 0.2868 0.2971 15 14 ( 3365 1knv_A) ( 250 1azo ) 0.2667 0.2857 7.2922 ( 0 4 6) 0 0.3082 0.3118 15 14 ( 3365 1knv_A) ( 336 1bam ) 0.2667 0.2857 6.2631 ( 0 1 6) 0 0.5324 0.5702 15 14 ( 3365 1knv_A) ( 581 1cfr ) 0.9999 0.9374 1.7347 ( 1 76 105) 0 0.9999 0.9374 15 16 ( 3365 1knv_A) ( 621 1ckq_A) 0.6633 0.5864 7.2481 ( 1 20 45) 0 0.6633 0.5864 15 17 ( 3365 1knv_A) ( 717 1d02_A) 0.5997 0.6918 5.4074 ( 0 18 36) 0 0.5997 0.6918 15 13 ( 3365 1knv_A) ( 788 1dc1_A) 0.6646 0.4758 7.0931 ( 1 25 45) 0 0.6646 0.4758 15 21 ( 3365 1knv_A) ( 825 1dfm_A) 0.3333 0.2941 3.7795 ( 0 3 10) 0 0.4894 0.4595 15 17 ( 3365 1knv_A) ( 886 1dmu_A) 0.2667 0.1905 6.5341 ( 0 4 6) 0 0.3660 0.3369 15 21 ( 3365 1knv_A) ( 982 1dzf_A) 0.3333 0.4998 6.2499 ( 0 2 10) 0 0.5332 0.7988 15 10 ( 3365 1knv_A) ( 1276 1ev7_A) 0.2666 0.2222 11.1977 ( 0 5 6) 0 0.2666 0.2499 15 18 ( 3365 1knv_A) ( 1367 1f1z_A) 0.4666 0.6359 5.6880 ( 0 11 21) 0 0.4666 0.6359 15 11 ( 3365 1knv_A) ( 1512 1fiu_A) 0.6107 0.5503 5.1917 ( 5 36 55) 0 0.6641 0.5545 15 18 ( 3365 1knv_A) ( 1665 1fzr_A) 0.2801 0.2970 4.7601 ( 1 3 15) 0 0.3333 0.5551 15 9 ( 3365 1knv_A) ( 1808 1gef_A) 0.3333 0.5554 5.4758 ( 0 2 10) 1 0.3333 0.5554 15 9 ( 3365 1knv_A) ( 2210 1hh1_A) 0.2667 0.4443 6.7032 ( 0 0 6) 0 0.4665 0.7762 15 9 ( 3365 1knv_A) ( 2707 1j23_A) 0.3333 0.4994 8.4122 ( 0 3 10) 0 0.5332 0.7989 15 10 ( 3365 1knv_A) ( 3258 1kc6_A) 0.2667 0.2353 5.2030 ( 0 2 6) 0 0.3898 0.3473 15 17 ( 3365 1knv_A) ( 3365 1knv_A) 1.0000 1.0000 0.0000 ( 0 82 105) 0 1.0000 1.0000 15 15 ( 3365 1knv_A) ( 4182 1na6_A) 0.2667 0.3636 6.2478 ( 0 1 6) 0 0.2667 0.3636 15 11 ( 3365 1knv_A) ( 5514 1r0v_A) 0.2666 0.5700 8.8059 ( 0 1 6) 0 0.3333 0.7141 15 7 ( 3365 1knv_A) ( 5516 1r0v_A) 0.2667 0.4998 6.3174 ( 0 1 6) 0 0.3332 0.6225 15 8 ( 3365 1knv_A) ( 5795 1sdo_A) 0.3333 0.3333 4.0448 ( 0 3 10) 0 0.5042 0.5042 15 15 ( 3365 1knv_A) ( 5867 1sx5_A) 0.2666 0.2500 8.6657 ( 0 5 6) 0 0.3996 0.3747 15 16 ( 3365 1knv_A) ( 6324 1vsr_A) 0.3332 0.6230 8.6195 ( 0 1 10) 0 0.4665 0.8718 15 8 ( 3365 1knv_A) ( 6453 2fok_A) 0.5969 0.7408 4.6317 ( 1 16 36) 0 0.5969 0.7408 15 12 ( 3365 1knv_A) ( 6592 3pvi_A) 0.2666 0.4995 7.9042 ( 0 0 6) 0 0.4310 0.5679 15 8 -------------------------------------------------------------------------------------------------------------------------