------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3258 1kc6_A) ( 62 1a79_A) 0.4106 0.9210 7.1334 ( 1 13 21) 0 0.4106 0.9210 17 7 ( 3258 1kc6_A) ( 222 1avq_A) 0.2353 0.2856 9.7180 ( 0 4 6) 0 0.3474 0.4145 17 14 ( 3258 1kc6_A) ( 250 1azo ) 0.2353 0.2857 6.6979 ( 0 5 6) 0 0.5601 0.6486 17 14 ( 3258 1kc6_A) ( 336 1bam ) 0.2353 0.2857 7.7555 ( 0 1 6) 0 0.2951 0.2977 17 14 ( 3258 1kc6_A) ( 581 1cfr ) 0.2353 0.2500 5.8914 ( 0 3 6) 0 0.4264 0.4435 17 16 ( 3258 1kc6_A) ( 621 1ckq_A) 0.4316 0.4316 8.5214 ( 2 10 36) 0 0.4316 0.4316 17 17 ( 3258 1kc6_A) ( 717 1d02_A) 0.2941 0.3845 6.8314 ( 0 5 10) 0 0.4108 0.4397 17 13 ( 3258 1kc6_A) ( 788 1dc1_A) 0.2940 0.2381 9.7278 ( 0 2 10) 0 0.2940 0.2765 17 21 ( 3258 1kc6_A) ( 825 1dfm_A) 0.2918 0.2918 9.9002 ( 1 7 10) 0 0.4883 0.4883 17 17 ( 3258 1kc6_A) ( 886 1dmu_A) 0.4704 0.3809 6.3964 ( 0 19 28) 0 0.6442 0.5228 17 21 ( 3258 1kc6_A) ( 982 1dzf_A) 0.2353 0.3998 8.1396 ( 0 1 6) 0 0.2941 0.4995 17 10 ( 3258 1kc6_A) ( 1276 1ev7_A) 0.2353 0.2222 7.3636 ( 0 5 6) 0 0.2700 0.2644 17 18 ( 3258 1kc6_A) ( 1367 1f1z_A) 0.2353 0.3635 8.0984 ( 0 4 6) 0 0.4117 0.6354 17 11 ( 3258 1kc6_A) ( 1512 1fiu_A) 0.2941 0.2778 6.8313 ( 0 4 10) 0 0.2941 0.2778 17 18 ( 3258 1kc6_A) ( 1665 1fzr_A) nil ( 3258 1kc6_A) ( 1808 1gef_A) 0.5290 0.9900 5.6350 ( 1 25 36) 0 0.5290 0.9900 17 9 ( 3258 1kc6_A) ( 2210 1hh1_A) 0.2941 0.5552 6.5668 ( 0 6 10) 0 0.3784 0.5552 17 9 ( 3258 1kc6_A) ( 2707 1j23_A) 0.2352 0.3991 12.2222 ( 0 4 6) 0 0.3048 0.3999 17 10 ( 3258 1kc6_A) ( 3258 1kc6_A) 1.0000 1.0000 0.0000 ( 0 108 136) 0 1.0000 1.0000 17 17 ( 3258 1kc6_A) ( 3365 1knv_A) 0.2353 0.2667 5.2030 ( 0 2 6) 0 0.3473 0.3898 17 15 ( 3258 1kc6_A) ( 4182 1na6_A) 0.2351 0.3623 15.2313 ( 0 5 6) 0 0.2351 0.3623 17 11 ( 3258 1kc6_A) ( 5514 1r0v_A) 0.2353 0.5688 10.3046 ( 0 4 6) 0 0.2353 0.5688 17 7 ( 3258 1kc6_A) ( 5516 1r0v_A) 0.2352 0.4967 12.9161 ( 0 4 6) 0 0.2352 0.4981 17 8 ( 3258 1kc6_A) ( 5795 1sdo_A) 0.2353 0.2667 4.5320 ( 0 3 6) 0 0.4865 0.5283 17 15 ( 3258 1kc6_A) ( 5867 1sx5_A) 0.6381 0.6755 5.0149 ( 3 40 55) 0 0.6381 0.6755 17 16 ( 3258 1kc6_A) ( 6324 1vsr_A) 0.2353 0.4994 8.2500 ( 0 2 6) 0 0.4086 0.7735 17 8 ( 3258 1kc6_A) ( 6453 2fok_A) 0.2941 0.4166 6.8687 ( 0 5 10) 0 0.3256 0.4166 17 12 ( 3258 1kc6_A) ( 6592 3pvi_A) 0.2353 0.4994 8.2683 ( 0 2 6) 0 0.2353 0.4994 17 8 -------------------------------------------------------------------------------------------------------------------------