------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2707 1j23_A) ( 62 1a79_A) 0.4000 0.5714 1.7661 ( 0 4 6) 0 0.4000 0.5714 10 7 ( 2707 1j23_A) ( 222 1avq_A) 0.3996 0.2856 10.3521 ( 0 3 6) 0 0.4000 0.3158 10 14 ( 2707 1j23_A) ( 250 1azo ) 0.3991 0.2855 12.4473 ( 0 4 6) 0 0.3991 0.3158 10 14 ( 2707 1j23_A) ( 336 1bam ) 0.4984 0.3568 10.8289 ( 0 4 10) 0 0.6903 0.4981 10 14 ( 2707 1j23_A) ( 581 1cfr ) 0.4996 0.3125 7.7877 ( 0 4 10) 0 0.7834 0.4983 10 16 ( 2707 1j23_A) ( 621 1ckq_A) 0.4000 0.2353 5.8970 ( 0 0 6) 0 0.5463 0.4595 10 17 ( 2707 1j23_A) ( 717 1d02_A) 0.5000 0.3846 4.3534 ( 0 2 10) 0 0.5000 0.3846 10 13 ( 2707 1j23_A) ( 788 1dc1_A) 0.5999 0.2857 4.3869 ( 0 5 15) 0 0.5999 0.2857 10 21 ( 2707 1j23_A) ( 825 1dfm_A) 0.3998 0.2353 8.0419 ( 0 3 6) 0 0.5861 0.3999 10 17 ( 2707 1j23_A) ( 886 1dmu_A) 0.3997 0.1905 9.3999 ( 0 4 6) 0 0.4203 0.3178 10 21 ( 2707 1j23_A) ( 982 1dzf_A) 0.3999 0.3999 7.4692 ( 0 3 6) 0 0.4000 0.4000 10 10 ( 2707 1j23_A) ( 1276 1ev7_A) 0.3998 0.2222 7.9584 ( 0 5 6) 0 0.4531 0.3186 10 18 ( 2707 1j23_A) ( 1367 1f1z_A) 0.3999 0.3636 6.2474 ( 0 2 6) 0 0.3999 0.3636 10 11 ( 2707 1j23_A) ( 1512 1fiu_A) 0.5980 0.3332 9.0946 ( 0 11 15) 0 0.5998 0.4066 10 18 ( 2707 1j23_A) ( 1665 1fzr_A) 0.5000 0.5555 2.9596 ( 0 2 10) 0 0.5000 0.5555 10 9 ( 2707 1j23_A) ( 1808 1gef_A) 0.4999 0.5555 4.7431 ( 0 8 10) 0 0.5000 0.5555 10 9 ( 2707 1j23_A) ( 2210 1hh1_A) 0.3999 0.4443 7.2201 ( 0 3 6) 0 0.5999 0.6665 10 9 ( 2707 1j23_A) ( 2707 1j23_A) 1.0000 1.0000 0.0000 ( 0 35 45) 0 1.0000 1.0000 10 10 ( 2707 1j23_A) ( 3258 1kc6_A) 0.3999 0.2353 7.1338 ( 0 5 6) 0 0.3999 0.3048 10 17 ( 2707 1j23_A) ( 3365 1knv_A) 0.4994 0.3333 8.4122 ( 0 3 10) 0 0.7989 0.5332 10 15 ( 2707 1j23_A) ( 4182 1na6_A) 0.4000 0.3636 5.0561 ( 0 3 6) 0 0.4999 0.4545 10 11 ( 2707 1j23_A) ( 5514 1r0v_A) 0.3999 0.5711 6.2059 ( 0 3 6) 0 0.4531 0.5711 10 7 ( 2707 1j23_A) ( 5516 1r0v_A) 0.3999 0.4996 7.4073 ( 0 3 6) 0 0.5000 0.6250 10 8 ( 2707 1j23_A) ( 5795 1sdo_A) 0.3998 0.2666 8.0499 ( 0 2 6) 0 0.3998 0.3208 10 15 ( 2707 1j23_A) ( 5867 1sx5_A) 0.3997 0.2500 9.5887 ( 0 4 6) 0 0.3999 0.2572 10 16 ( 2707 1j23_A) ( 6324 1vsr_A) 0.4999 0.6246 5.7326 ( 0 3 10) 0 0.5999 0.7497 10 8 ( 2707 1j23_A) ( 6453 2fok_A) 0.4995 0.4165 7.8607 ( 0 2 10) 0 0.7992 0.6664 10 12 ( 2707 1j23_A) ( 6592 3pvi_A) 0.3999 0.4996 7.4202 ( 0 1 6) 0 0.3999 0.4996 10 8 -------------------------------------------------------------------------------------------------------------------------