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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  222 1avq_A)  (   62 1a79_A)     0.4286   0.8569   3.3925 (   0   11   15)   0     0.4286   0.8569   14   7
(  222 1avq_A)  (  222 1avq_A)     1.0000   1.0000   0.0000 (   0   79   91)   0     1.0000   1.0000   14  14
(  222 1avq_A)  (  250 1azo  )     0.3571   0.3571   5.4842 (   0    8   10)   0     0.3966   0.3966   14  14
(  222 1avq_A)  (  336 1bam  )     0.3561   0.3561  14.8806 (   0    9   10)   0     0.3561   0.3561   14  14
(  222 1avq_A)  (  581 1cfr  )     0.2857   0.2500   8.0879 (   0    1    6)   0     0.3473   0.3250   14  16
(  222 1avq_A)  (  621 1ckq_A)     0.2857   0.2353   8.7929 (   0    1    6)   0     0.2857   0.2353   14  17
(  222 1avq_A)  (  717 1d02_A)     0.2857   0.3076   9.2345 (   0    3    6)   0     0.2857   0.3077   14  13
(  222 1avq_A)  (  788 1dc1_A)     0.3473   0.2696   7.6891 (   2    8   15)   0     0.3846   0.2785   14  21
(  222 1avq_A)  (  825 1dfm_A)     0.2857   0.2353   7.7150 (   0    5    6)   0     0.3370   0.2859   14  17
(  222 1avq_A)  (  886 1dmu_A)     0.2857   0.1905   7.3184 (   0    3    6)   0     0.2857   0.2121   14  21
(  222 1avq_A)  (  982 1dzf_A)     0.3571   0.5000   4.0680 (   0    3   10)   0     0.3571   0.5000   14  10
(  222 1avq_A)  ( 1276 1ev7_A)     0.3847   0.3186   4.3533 (   2   10   15)   0     0.3847   0.3186   14  18
(  222 1avq_A)  ( 1367 1f1z_A)     0.3571   0.4545   4.9591 (   0    5   10)   0     0.4966   0.6252   14  11
(  222 1avq_A)  ( 1512 1fiu_A)     0.2857   0.2222   9.2950 (   0    4    6)   0     0.4282   0.3332   14  18
(  222 1avq_A)  ( 1665 1fzr_A)     0.2857   0.4441   8.5559 (   0    3    6)   0     0.2857   0.4441   14   9
(  222 1avq_A)  ( 1808 1gef_A)     0.4286   0.6666   3.6899 (   0   11   15)   0     0.4286   0.6666   14   9
(  222 1avq_A)  ( 2210 1hh1_A)     0.4285   0.6664   4.5827 (   0    7   15)   0     0.4285   0.6664   14   9
(  222 1avq_A)  ( 2707 1j23_A)     0.2856   0.3996  10.3521 (   0    3    6)   0     0.3158   0.4000   14  10
(  222 1avq_A)  ( 3258 1kc6_A)     0.2856   0.2353   9.7180 (   0    4    6)   0     0.4145   0.3474   14  17
(  222 1avq_A)  ( 3365 1knv_A)     0.2857   0.2666   8.0317 (   0    3    6)   0     0.2971   0.2868   14  15
(  222 1avq_A)  ( 4182 1na6_A)     0.2856   0.3632  11.3699 (   0    4    6)   0     0.2856   0.3632   14  11
(  222 1avq_A)  ( 5514 1r0v_A)     0.4286   0.8567   4.0849 (   0   11   15)   0     0.4286   0.8567   14   7
(  222 1avq_A)  ( 5516 1r0v_A)     0.4286   0.7499   3.0795 (   0   11   15)   0     0.4286   0.7499   14   8
(  222 1avq_A)  ( 5795 1sdo_A)     0.3569   0.3332  10.3455 (   0    5   10)   0     0.3569   0.3332   14  15
(  222 1avq_A)  ( 5867 1sx5_A)     0.2857   0.2500   9.1093 (   0    4    6)   0     0.3466   0.3069   14  16
(  222 1avq_A)  ( 6324 1vsr_A)     0.2857   0.4995   7.9462 (   0    4    6)   0     0.4285   0.7483   14   8
(  222 1avq_A)  ( 6453 2fok_A)     0.3567   0.4157  11.8440 (   0    5   10)   0     0.3567   0.4157   14  12
(  222 1avq_A)  ( 6592 3pvi_A)     0.2857   0.4999   5.4943 (   0    2    6)   0     0.3119   0.4999   14   8

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