------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1808 1gef_A) ( 62 1a79_A) 0.7777 0.9997 3.0230 ( 0 15 21) 0 0.7777 0.9997 9 7 ( 1808 1gef_A) ( 222 1avq_A) 0.6666 0.4286 3.6899 ( 0 11 15) 0 0.6666 0.4286 9 14 ( 1808 1gef_A) ( 250 1azo ) 0.5553 0.3571 6.2381 ( 0 7 10) 0 0.5553 0.3571 9 14 ( 1808 1gef_A) ( 336 1bam ) 0.2440 0.2227 11.6007 ( 2 5 6) 0 0.2440 0.2227 9 14 ( 1808 1gef_A) ( 581 1cfr ) 0.4443 0.2500 7.3348 ( 0 3 6) 0 0.5545 0.3124 9 16 ( 1808 1gef_A) ( 621 1ckq_A) 0.4438 0.2353 9.9196 ( 0 3 6) 0 0.5519 0.2940 9 17 ( 1808 1gef_A) ( 717 1d02_A) 0.4443 0.3077 6.2564 ( 0 0 6) 0 0.4443 0.3077 9 13 ( 1808 1gef_A) ( 788 1dc1_A) 0.7686 0.3332 9.6686 ( 0 12 21) 0 0.7686 0.3332 9 21 ( 1808 1gef_A) ( 825 1dfm_A) 0.4444 0.2353 4.8346 ( 0 1 6) 0 0.7776 0.4118 9 17 ( 1808 1gef_A) ( 886 1dmu_A) 0.8878 0.3809 4.7592 ( 0 18 28) 0 0.8878 0.3809 9 21 ( 1808 1gef_A) ( 982 1dzf_A) 0.4434 0.3994 11.1727 ( 0 2 6) 0 0.4434 0.3994 9 10 ( 1808 1gef_A) ( 1276 1ev7_A) 0.4668 0.3186 4.2270 ( 2 10 15) 0 0.4668 0.3186 9 18 ( 1808 1gef_A) ( 1367 1f1z_A) 0.6665 0.5454 4.0656 ( 0 8 15) 0 0.6665 0.5454 9 11 ( 1808 1gef_A) ( 1512 1fiu_A) 0.5550 0.2778 7.2255 ( 0 6 10) 0 0.5550 0.2990 9 18 ( 1808 1gef_A) ( 1665 1fzr_A) 0.4444 0.4444 5.0378 ( 0 2 6) 0 0.4444 0.4444 9 9 ( 1808 1gef_A) ( 1808 1gef_A) 1.0000 1.0000 0.0000 ( 0 29 36) 0 1.0000 1.0000 9 9 ( 1808 1gef_A) ( 2210 1hh1_A) 0.8888 0.8888 2.5396 ( 0 17 28) 0 0.8888 0.8888 9 9 ( 1808 1gef_A) ( 2707 1j23_A) 0.5555 0.4999 4.7431 ( 0 8 10) 0 0.5555 0.5000 9 10 ( 1808 1gef_A) ( 3258 1kc6_A) 0.9900 0.5290 5.6350 ( 1 25 36) 0 0.9900 0.5290 9 17 ( 1808 1gef_A) ( 3365 1knv_A) 0.4443 0.2667 6.7864 ( 0 1 6) 0 0.5554 0.3333 9 15 ( 1808 1gef_A) ( 4182 1na6_A) 0.4444 0.3636 5.7932 ( 0 2 6) 0 0.4444 0.3636 9 11 ( 1808 1gef_A) ( 5514 1r0v_A) 0.7776 0.9995 3.3005 ( 0 15 21) 0 0.7776 0.9995 9 7 ( 1808 1gef_A) ( 5516 1r0v_A) 0.7776 0.8747 3.5035 ( 0 15 21) 0 0.7776 0.8747 9 8 ( 1808 1gef_A) ( 5795 1sdo_A) 0.4439 0.2666 9.4627 ( 0 3 6) 0 0.5733 0.3899 9 15 ( 1808 1gef_A) ( 5867 1sx5_A) 0.8878 0.4999 4.7467 ( 0 22 28) 0 0.8878 0.4999 9 16 ( 1808 1gef_A) ( 6324 1vsr_A) 0.4444 0.4999 5.3681 ( 0 0 6) 0 0.4444 0.4999 9 8 ( 1808 1gef_A) ( 6453 2fok_A) 0.4444 0.3333 5.8015 ( 0 2 6) 0 0.4444 0.3333 9 12 ( 1808 1gef_A) ( 6592 3pvi_A) 0.5555 0.6249 3.7957 ( 0 5 10) 0 0.5555 0.6249 9 8 -------------------------------------------------------------------------------------------------------------------------