------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1665 1fzr_A) ( 62 1a79_A) 0.4444 0.5713 4.8649 ( 0 2 6) 0 0.4444 0.5713 9 7 ( 1665 1fzr_A) ( 222 1avq_A) 0.4441 0.2857 8.5559 ( 0 3 6) 0 0.4441 0.2857 9 14 ( 1665 1fzr_A) ( 250 1azo ) 0.4441 0.2857 8.7114 ( 0 1 6) 0 0.4441 0.2857 9 14 ( 1665 1fzr_A) ( 336 1bam ) 0.5555 0.3571 4.7095 ( 0 2 10) 0 0.6662 0.4285 9 14 ( 1665 1fzr_A) ( 581 1cfr ) 0.4443 0.2500 6.5362 ( 0 0 6) 0 0.5551 0.3125 9 16 ( 1665 1fzr_A) ( 621 1ckq_A) 0.5555 0.2941 3.8831 ( 0 2 10) 0 0.5555 0.2941 9 17 ( 1665 1fzr_A) ( 717 1d02_A) 0.5555 0.3846 2.5279 ( 0 1 10) 0 0.5555 0.3846 9 13 ( 1665 1fzr_A) ( 788 1dc1_A) 0.6665 0.2857 3.9463 ( 0 2 15) 0 0.6665 0.2857 9 21 ( 1665 1fzr_A) ( 825 1dfm_A) 0.4438 0.2353 10.0570 ( 0 3 6) 0 0.5464 0.2937 9 17 ( 1665 1fzr_A) ( 886 1dmu_A) 0.4436 0.1905 10.4863 ( 0 3 6) 0 0.4436 0.2049 9 21 ( 1665 1fzr_A) ( 982 1dzf_A) 0.5555 0.5000 3.2818 ( 0 2 10) 0 0.5555 0.5000 9 10 ( 1665 1fzr_A) ( 1276 1ev7_A) 0.4283 0.2217 22.7636 ( 0 6 6) 0 0.4283 0.2217 9 18 ( 1665 1fzr_A) ( 1367 1f1z_A) 0.3509 0.3182 16.8750 ( 1 4 6) 0 0.3509 0.3182 9 11 ( 1665 1fzr_A) ( 1512 1fiu_A) 0.6666 0.3333 3.7448 ( 0 3 15) 0 0.6666 0.3333 9 18 ( 1665 1fzr_A) ( 1665 1fzr_A) 1.0000 1.0000 0.0000 ( 0 27 36) 0 1.0000 1.0000 9 9 ( 1665 1fzr_A) ( 1808 1gef_A) 0.4444 0.4444 5.0378 ( 0 2 6) 0 0.4444 0.4444 9 9 ( 1665 1fzr_A) ( 2210 1hh1_A) 0.4444 0.4444 3.7722 ( 0 2 6) 0 0.4444 0.4444 9 9 ( 1665 1fzr_A) ( 2707 1j23_A) 0.5555 0.5000 2.9596 ( 0 2 10) 0 0.5555 0.5000 9 10 ( 1665 1fzr_A) ( 3258 1kc6_A) nil ( 1665 1fzr_A) ( 3365 1knv_A) 0.4443 0.2667 6.3147 ( 0 0 6) 0 0.5551 0.3333 9 15 ( 1665 1fzr_A) ( 4182 1na6_A) 0.4444 0.3636 4.8993 ( 0 1 6) 0 0.5555 0.4545 9 11 ( 1665 1fzr_A) ( 5514 1r0v_A) 0.4444 0.5713 4.5309 ( 0 2 6) 0 0.4444 0.5713 9 7 ( 1665 1fzr_A) ( 5516 1r0v_A) 0.4442 0.4996 7.6705 ( 0 1 6) 0 0.4442 0.4996 9 8 ( 1665 1fzr_A) ( 5795 1sdo_A) 0.6665 0.4000 4.1751 ( 0 7 15) 0 0.6665 0.4000 9 15 ( 1665 1fzr_A) ( 5867 1sx5_A) 0.2441 0.2102 9.6989 ( 2 5 6) 0 0.2441 0.2102 9 16 ( 1665 1fzr_A) ( 6324 1vsr_A) 0.1495 0.1497 19.0131 ( 2 3 6) 0 0.1495 0.1497 9 8 ( 1665 1fzr_A) ( 6453 2fok_A) 0.5555 0.4167 2.9362 ( 0 2 10) 0 0.5555 0.4167 9 12 ( 1665 1fzr_A) ( 6592 3pvi_A) 0.4441 0.4993 8.6294 ( 0 2 6) 0 0.4441 0.4993 9 8 -------------------------------------------------------------------------------------------------------------------------