------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1512 1fiu_A) ( 62 1a79_A) 0.2555 0.3451 5.9278 ( 2 7 10) 0 0.3085 0.5705 18 7 ( 1512 1fiu_A) ( 222 1avq_A) 0.2222 0.2857 9.2950 ( 0 4 6) 0 0.3332 0.4282 18 14 ( 1512 1fiu_A) ( 250 1azo ) 0.2222 0.2857 4.7368 ( 0 5 6) 0 0.3651 0.3975 18 14 ( 1512 1fiu_A) ( 336 1bam ) 0.2777 0.3570 8.6309 ( 0 4 10) 0 0.3440 0.3687 18 14 ( 1512 1fiu_A) ( 581 1cfr ) 0.5821 0.6385 5.5698 ( 4 36 55) 0 0.5997 0.6675 18 16 ( 1512 1fiu_A) ( 621 1ckq_A) 0.5548 0.5872 4.6005 ( 1 21 45) 0 0.5548 0.5872 18 17 ( 1512 1fiu_A) ( 717 1d02_A) 0.5554 0.7687 4.7873 ( 0 19 45) 0 0.5554 0.7687 18 13 ( 1512 1fiu_A) ( 788 1dc1_A) 0.5898 0.5135 8.8649 ( 3 30 55) 0 0.5898 0.5135 18 21 ( 1512 1fiu_A) ( 825 1dfm_A) 0.2222 0.2353 6.5974 ( 0 3 6) 0 0.3731 0.3913 18 17 ( 1512 1fiu_A) ( 886 1dmu_A) 0.2685 0.2336 9.5184 ( 2 9 10) 0 0.3077 0.2989 18 21 ( 1512 1fiu_A) ( 982 1dzf_A) 0.3801 0.5886 3.8620 ( 1 7 21) 0 0.3801 0.5886 18 10 ( 1512 1fiu_A) ( 1276 1ev7_A) 0.2222 0.2222 7.1692 ( 0 2 6) 0 0.2222 0.2222 18 18 ( 1512 1fiu_A) ( 1367 1f1z_A) 0.3333 0.5454 3.8183 ( 0 5 15) 0 0.3333 0.5454 18 11 ( 1512 1fiu_A) ( 1512 1fiu_A) 1.0000 1.0000 0.0000 ( 0 127 153) 0 1.0000 1.0000 18 18 ( 1512 1fiu_A) ( 1665 1fzr_A) 0.3333 0.6666 3.7448 ( 0 3 15) 0 0.3333 0.6666 18 9 ( 1512 1fiu_A) ( 1808 1gef_A) 0.2990 0.3154 5.3297 ( 6 19 28) 0 0.2990 0.5550 18 9 ( 1512 1fiu_A) ( 2210 1hh1_A) 0.2222 0.4443 7.2832 ( 0 0 6) 0 0.3333 0.6644 18 9 ( 1512 1fiu_A) ( 2707 1j23_A) 0.3333 0.5985 8.4791 ( 0 9 15) 0 0.4066 0.5998 18 10 ( 1512 1fiu_A) ( 3258 1kc6_A) 0.2778 0.2941 6.8313 ( 0 4 10) 0 0.2778 0.2941 18 17 ( 1512 1fiu_A) ( 3365 1knv_A) 0.5503 0.6107 5.1917 ( 5 36 55) 0 0.5545 0.6641 18 15 ( 1512 1fiu_A) ( 4182 1na6_A) 0.2771 0.4470 9.0863 ( 1 9 10) 0 0.4248 0.5828 18 11 ( 1512 1fiu_A) ( 5514 1r0v_A) 0.2222 0.5710 6.5791 ( 0 3 6) 0 0.2222 0.5710 18 7 ( 1512 1fiu_A) ( 5516 1r0v_A) 0.2636 0.3848 5.2379 ( 2 8 10) 0 0.2636 0.4995 18 8 ( 1512 1fiu_A) ( 5795 1sdo_A) 0.2222 0.2666 7.7438 ( 0 4 6) 0 0.3650 0.4052 18 15 ( 1512 1fiu_A) ( 5867 1sx5_A) 0.2500 0.2581 6.9173 ( 4 11 15) 0 0.2869 0.3039 18 16 ( 1512 1fiu_A) ( 6324 1vsr_A) 0.2777 0.6225 9.1296 ( 0 4 10) 0 0.2777 0.6225 18 8 ( 1512 1fiu_A) ( 6453 2fok_A) 0.5173 0.6518 4.9776 ( 3 22 45) 0 0.5481 0.7832 18 12 ( 1512 1fiu_A) ( 6592 3pvi_A) 0.2715 0.4587 6.8735 ( 1 5 10) 0 0.2715 0.4999 18 8 -------------------------------------------------------------------------------------------------------------------------