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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5307 1qf6_A)  (  203 1ati_A)     0.9999   0.9999   1.6937 (   0   20   36)   0     0.9999   0.9999    9   9
( 5307 1qf6_A)  (  665 1crz_A)     0.8848   0.9927   6.6359 (   0   12   28)   0     0.8848   0.9927    9   8
( 5307 1qf6_A)  ( 1129 1eex_B)     0.8883   0.7271   4.0646 (   0   10   28)   0     0.8883   0.7271    9  11
( 5307 1qf6_A)  ( 1296 1ex2_A)     0.4443   0.3077   7.2774 (   0    1    6)   0     0.7036   0.5703    9  13
( 5307 1qf6_A)  ( 1734 1g5h_A)     0.8559   0.8559   3.0451 (   1   14   28)   0     0.8559   0.8559    9   9
( 5307 1qf6_A)  ( 2082 1h4v_B)     0.8888   0.8888   2.2109 (   0   14   28)   0     0.8888   0.8888    9   9
( 5307 1qf6_A)  ( 2167 1hc7_A)     0.6371   0.6371   4.8315 (   3   20   36)   0     0.6371   0.6371    9   9
( 5307 1qf6_A)  ( 2290 1htt_A)     0.8888   0.8888   2.4777 (   0   14   28)   0     0.8888   0.8888    9   9
( 5307 1qf6_A)  ( 3201 1k7k_A)     0.8088   0.6444   7.6564 (   1   11   28)   0     0.8088   0.6444    9  12
( 5307 1qf6_A)  ( 4194 1nbw_B)     0.8883   0.9989   4.1158 (   0   12   28)   0     0.8883   0.9989    9   8
( 5307 1qf6_A)  ( 4275 1nj8_A)     0.7302   0.7302   1.7469 (   2   17   28)   0     0.7302   0.7302    9   9
( 5307 1qf6_A)  ( 5300 1qe0_A)     0.8633   0.8633   2.8377 (   1   15   28)   0     0.8633   0.8633    9   9
( 5307 1qf6_A)  ( 5307 1qf6_A)     1.0000   1.0000   0.0000 (   0   22   36)   0     1.0000   1.0000    9   9
( 5307 1qf6_A)  ( 6192 1v7r_A)     0.8842   0.6146   6.8914 (   0   11   28)   0     0.8842   0.6146    9  13

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