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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5300 1qe0_A)  (  203 1ati_A)     0.8888   0.8888   2.1374 (   0   14   28)   0     0.8888   0.8888    9   9
( 5300 1qe0_A)  (  665 1crz_A)     0.8868   0.9962   5.6305 (   0   12   28)   0     0.8868   0.9962    9   8
( 5300 1qe0_A)  ( 1129 1eex_B)     0.8884   0.7271   3.9929 (   0   10   28)   0     0.8884   0.7271    9  11
( 5300 1qe0_A)  ( 1296 1ex2_A)     0.4442   0.3076   8.0680 (   0    3    6)   0     0.4442   0.3076    9  13
( 5300 1qe0_A)  ( 1734 1g5h_A)     0.9970   0.9970   5.2850 (   0   22   36)   0     0.9970   0.9970    9   9
( 5300 1qe0_A)  ( 2082 1h4v_B)     0.9896   0.9896   1.9269 (   1   22   36)   0     0.9896   0.9896    9   9
( 5300 1qe0_A)  ( 2167 1hc7_A)     0.8742   0.8742   6.5932 (   2   22   36)   0     0.8742   0.8742    9   9
( 5300 1qe0_A)  ( 2290 1htt_A)     0.9895   0.9895   2.2848 (   1   22   36)   0     0.9895   0.9895    9   9
( 5300 1qe0_A)  ( 3201 1k7k_A)     0.8828   0.6652   7.3470 (   0   11   28)   0     0.8828   0.6652    9  12
( 5300 1qe0_A)  ( 4194 1nbw_B)     0.8881   0.9987   4.3297 (   0   12   28)   0     0.8881   0.9987    9   8
( 5300 1qe0_A)  ( 4275 1nj8_A)     0.8746   0.8746   6.4356 (   2   22   36)   0     0.8746   0.8746    9   9
( 5300 1qe0_A)  ( 5300 1qe0_A)     1.0000   1.0000   0.0000 (   0   23   36)   0     1.0000   1.0000    9   9
( 5300 1qe0_A)  ( 5307 1qf6_A)     0.8633   0.8633   2.8377 (   1   15   28)   0     0.8633   0.8633    9   9
( 5300 1qe0_A)  ( 6192 1v7r_A)     0.7753   0.5381   6.9546 (   0   10   21)   0     0.7753   0.5381    9  13

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