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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4275 1nj8_A)  (  203 1ati_A)     0.9050   0.9050   4.8588 (   2   24   36)   0     0.9050   0.9050    9   9
( 4275 1nj8_A)  (  665 1crz_A)     0.8781   0.9808   8.5235 (   0   14   28)   0     0.8781   0.9808    9   8
( 4275 1nj8_A)  ( 1129 1eex_B)     0.8845   0.7257   6.7549 (   0   12   28)   0     0.8845   0.7257    9  11
( 4275 1nj8_A)  ( 1296 1ex2_A)     0.4442   0.3077   7.7363 (   0    3    6)   0     0.4442   0.3077    9  13
( 4275 1nj8_A)  ( 1734 1g5h_A)     0.8778   0.8778   3.0957 (   2   22   36)   0     0.8778   0.8778    9   9
( 4275 1nj8_A)  ( 2082 1h4v_B)     0.9901   0.9901   5.1370 (   1   24   36)   0     0.9901   0.9901    9   9
( 4275 1nj8_A)  ( 2167 1hc7_A)     0.9999   0.9999   1.6869 (   0   26   36)   0     0.9999   0.9999    9   9
( 4275 1nj8_A)  ( 2290 1htt_A)     0.9916   0.9916   4.8690 (   1   25   36)   0     0.9916   0.9916    9   9
( 4275 1nj8_A)  ( 3201 1k7k_A)     0.8751   0.6633   9.0799 (   0   12   28)   0     0.8751   0.6633    9  12
( 4275 1nj8_A)  ( 4194 1nbw_B)     0.8850   0.9930   6.5652 (   0   14   28)   0     0.8850   0.9930    9   8
( 4275 1nj8_A)  ( 4275 1nj8_A)     1.0000   1.0000   0.0000 (   0   27   36)   0     1.0000   1.0000    9   9
( 4275 1nj8_A)  ( 5300 1qe0_A)     0.8746   0.8746   6.4356 (   2   22   36)   0     0.8746   0.8746    9   9
( 4275 1nj8_A)  ( 5307 1qf6_A)     0.7302   0.7302   1.7469 (   2   17   28)   0     0.7302   0.7302    9   9
( 4275 1nj8_A)  ( 6192 1v7r_A)     0.2861   0.2554   8.9919 (   1    3    6)   0     0.6034   0.4494    9  13

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