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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4194 1nbw_B)  (  203 1ati_A)     0.9990   0.8883   4.0437 (   0   13   28)   0     0.9990   0.8883    8   9
( 4194 1nbw_B)  (  665 1crz_A)     0.9662   0.9662   6.5389 (   1   17   28)   0     0.9662   0.9662    8   8
( 4194 1nbw_B)  ( 1129 1eex_B)     0.9999   0.7273   1.7779 (   0   17   28)   0     0.9999   0.7273    8  11
( 4194 1nbw_B)  ( 1296 1ex2_A)     0.8710   0.5381   6.7433 (   0   12   21)   0     0.8710   0.5381    8  13
( 4194 1nbw_B)  ( 1734 1g5h_A)     0.9954   0.8863   5.9127 (   0   13   28)   0     0.9954   0.8863    8   9
( 4194 1nbw_B)  ( 2082 1h4v_B)     0.9991   0.8884   3.8775 (   0   16   28)   0     0.9991   0.8884    8   9
( 4194 1nbw_B)  ( 2167 1hc7_A)     0.9918   0.8843   6.8443 (   0   14   28)   0     0.9918   0.8843    8   9
( 4194 1nbw_B)  ( 2290 1htt_A)     0.9986   0.8881   4.3683 (   0   15   28)   0     0.9986   0.8881    8   9
( 4194 1nbw_B)  ( 3201 1k7k_A)     0.9910   0.6655   7.0189 (   0   13   28)   0     0.9910   0.6655    8  12
( 4194 1nbw_B)  ( 4194 1nbw_B)     1.0000   1.0000   0.0000 (   0   19   28)   0     1.0000   1.0000    8   8
( 4194 1nbw_B)  ( 4275 1nj8_A)     0.9930   0.8850   6.5652 (   0   14   28)   0     0.9930   0.8850    8   9
( 4194 1nbw_B)  ( 5300 1qe0_A)     0.9987   0.8881   4.3297 (   0   12   28)   0     0.9987   0.8881    8   9
( 4194 1nbw_B)  ( 5307 1qf6_A)     0.9989   0.8883   4.1158 (   0   12   28)   0     0.9989   0.8883    8   9
( 4194 1nbw_B)  ( 6192 1v7r_A)     0.9934   0.6148   6.4706 (   0   15   28)   0     0.9934   0.6148    8  13

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