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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3201 1k7k_A)  (  203 1ati_A)     0.6653   0.8831   7.2624 (   0   10   28)   0     0.6653   0.8831   12   9
( 3201 1k7k_A)  (  665 1crz_A)     0.6664   0.9978   4.9144 (   0   15   28)   0     0.6664   0.9978   12   8
( 3201 1k7k_A)  ( 1129 1eex_B)     0.6656   0.7256   6.8235 (   0   12   28)   0     0.6781   0.7256   12  11
( 3201 1k7k_A)  ( 1296 1ex2_A)     0.5833   0.5384   3.8229 (   0   11   21)   0     0.5833   0.5384   12  13
( 3201 1k7k_A)  ( 1734 1g5h_A)     0.6641   0.8782   8.5015 (   0   12   28)   0     0.6641   0.8782   12   9
( 3201 1k7k_A)  ( 2082 1h4v_B)     0.6654   0.8835   7.1358 (   0   13   28)   0     0.6654   0.8835   12   9
( 3201 1k7k_A)  ( 2167 1hc7_A)     0.3331   0.4434  11.2834 (   0    4    6)   0     0.3331   0.4434   12   9
( 3201 1k7k_A)  ( 2290 1htt_A)     0.6652   0.8828   7.3494 (   0   12   28)   0     0.6652   0.8828   12   9
( 3201 1k7k_A)  ( 3201 1k7k_A)     1.0000   1.0000   0.0000 (   0   53   66)   0     1.0000   1.0000   12  12
( 3201 1k7k_A)  ( 4194 1nbw_B)     0.6655   0.9910   7.0189 (   0   13   28)   0     0.6655   0.9910   12   8
( 3201 1k7k_A)  ( 4275 1nj8_A)     0.6633   0.8751   9.0799 (   0   12   28)   0     0.6633   0.8751   12   9
( 3201 1k7k_A)  ( 5300 1qe0_A)     0.6652   0.8828   7.3470 (   0   11   28)   0     0.6652   0.8828   12   9
( 3201 1k7k_A)  ( 5307 1qf6_A)     0.6444   0.8088   7.6564 (   1   11   28)   0     0.6444   0.8088   12   9
( 3201 1k7k_A)  ( 6192 1v7r_A)     0.9119   0.8606   3.3540 (   4   49   66)   0     0.9119   0.8606   12  13

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