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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2290 1htt_A)  (  203 1ati_A)     0.7118   0.7118   1.5465 (   3   23   36)   0     0.7118   0.7118    9   9
( 2290 1htt_A)  (  665 1crz_A)     0.8866   0.9959   5.7335 (   0   15   28)   0     0.8866   0.9959    9   8
( 2290 1htt_A)  ( 1129 1eex_B)     0.8882   0.7270   4.2829 (   0   13   28)   0     0.8882   0.7270    9  11
( 2290 1htt_A)  ( 1296 1ex2_A)     0.2860   0.2553  12.9110 (   1    3    6)   0     0.4440   0.3076    9  13
( 2290 1htt_A)  ( 1734 1g5h_A)     0.9899   0.9899   4.3837 (   1   23   36)   0     0.9899   0.9899    9   9
( 2290 1htt_A)  ( 2082 1h4v_B)     0.9999   0.9999   1.0539 (   0   25   36)   0     0.9999   0.9999    9   9
( 2290 1htt_A)  ( 2167 1hc7_A)     0.9915   0.9915   4.9490 (   1   25   36)   0     0.9915   0.9915    9   9
( 2290 1htt_A)  ( 2290 1htt_A)     1.0000   1.0000   0.0000 (   0   26   36)   0     1.0000   1.0000    9   9
( 2290 1htt_A)  ( 3201 1k7k_A)     0.8828   0.6652   7.3494 (   0   12   28)   0     0.8828   0.6652    9  12
( 2290 1htt_A)  ( 4194 1nbw_B)     0.8881   0.9986   4.3683 (   0   15   28)   0     0.8881   0.9986    9   8
( 2290 1htt_A)  ( 4275 1nj8_A)     0.9916   0.9916   4.8690 (   1   25   36)   0     0.9916   0.9916    9   9
( 2290 1htt_A)  ( 5300 1qe0_A)     0.9895   0.9895   2.2848 (   1   22   36)   0     0.9895   0.9895    9   9
( 2290 1htt_A)  ( 5307 1qf6_A)     0.8888   0.8888   2.4777 (   0   14   28)   0     0.8888   0.8888    9   9
( 2290 1htt_A)  ( 6192 1v7r_A)     0.8842   0.6146   6.8685 (   0   14   28)   0     0.8842   0.6146    9  13

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