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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  203 1ati_A)  (  203 1ati_A)     1.0000   1.0000   0.0000 (   0   24   36)   0     1.0000   1.0000    9   9
(  203 1ati_A)  (  665 1crz_A)     0.8865   0.9958   5.7887 (   0   13   28)   0     0.8865   0.9958    9   8
(  203 1ati_A)  ( 1129 1eex_B)     0.8883   0.7271   4.0674 (   0   11   28)   0     0.8883   0.7271    9  11
(  203 1ati_A)  ( 1296 1ex2_A)     0.6655   0.4613   7.0095 (   0    7   15)   0     0.7755   0.5381    9  13
(  203 1ati_A)  ( 1734 1g5h_A)     0.8761   0.8761   1.1412 (   1   18   28)   0     0.8761   0.8761    9   9
(  203 1ati_A)  ( 2082 1h4v_B)     0.8889   0.8889   1.0903 (   0   15   28)   0     0.8889   0.8889    9   9
(  203 1ati_A)  ( 2167 1hc7_A)     0.8917   0.8917   5.0807 (   2   23   36)   0     0.8917   0.8917    9   9
(  203 1ati_A)  ( 2290 1htt_A)     0.7118   0.7118   1.5465 (   3   23   36)   0     0.7118   0.7118    9   9
(  203 1ati_A)  ( 3201 1k7k_A)     0.8831   0.6653   7.2624 (   0   10   28)   0     0.8831   0.6653    9  12
(  203 1ati_A)  ( 4194 1nbw_B)     0.8883   0.9990   4.0437 (   0   13   28)   0     0.8883   0.9990    9   8
(  203 1ati_A)  ( 4275 1nj8_A)     0.9050   0.9050   4.8588 (   2   24   36)   0     0.9050   0.9050    9   9
(  203 1ati_A)  ( 5300 1qe0_A)     0.8888   0.8888   2.1374 (   0   14   28)   0     0.8888   0.8888    9   9
(  203 1ati_A)  ( 5307 1qf6_A)     0.9999   0.9999   1.6937 (   0   20   36)   0     0.9999   0.9999    9   9
(  203 1ati_A)  ( 6192 1v7r_A)     0.8849   0.6147   6.6237 (   0   12   28)   0     0.8849   0.6415    9  13

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