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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1129 1eex_B)  (  203 1ati_A)     0.7271   0.8883   4.0674 (   0   11   28)   0     0.7271   0.8883   11   9
( 1129 1eex_B)  (  665 1crz_A)     0.7185   0.9601   6.3153 (   1   16   28)   0     0.7258   0.9929   11   8
( 1129 1eex_B)  ( 1129 1eex_B)     1.0000   1.0000   0.0000 (   0   42   55)   0     1.0000   1.0000   11  11
( 1129 1eex_B)  ( 1296 1ex2_A)     0.3635   0.3076   7.9748 (   0    1    6)   0     0.5235   0.4946   11  13
( 1129 1eex_B)  ( 1734 1g5h_A)     0.7262   0.8859   6.1358 (   0   11   28)   0     0.7262   0.8859   11   9
( 1129 1eex_B)  ( 2082 1h4v_B)     0.7271   0.8884   3.8652 (   0   14   28)   0     0.7271   0.8884   11   9
( 1129 1eex_B)  ( 2167 1hc7_A)     0.7254   0.8838   7.0143 (   0   12   28)   0     0.7254   0.8838   11   9
( 1129 1eex_B)  ( 2290 1htt_A)     0.7270   0.8882   4.2829 (   0   13   28)   0     0.7270   0.8882   11   9
( 1129 1eex_B)  ( 3201 1k7k_A)     0.7256   0.6656   6.8235 (   0   12   28)   0     0.7256   0.6781   11  12
( 1129 1eex_B)  ( 4194 1nbw_B)     0.7273   0.9999   1.7779 (   0   17   28)   0     0.7273   0.9999   11   8
( 1129 1eex_B)  ( 4275 1nj8_A)     0.7257   0.8845   6.7549 (   0   12   28)   0     0.7257   0.8845   11   9
( 1129 1eex_B)  ( 5300 1qe0_A)     0.7271   0.8884   3.9929 (   0   10   28)   0     0.7271   0.8884   11   9
( 1129 1eex_B)  ( 5307 1qf6_A)     0.7271   0.8883   4.0646 (   0   10   28)   0     0.7271   0.8883   11   9
( 1129 1eex_B)  ( 6192 1v7r_A)     0.7259   0.6148   6.5176 (   0   14   28)   0     0.8088   0.6882   11  13

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