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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1944 1gt9_1)  ( 1786 1ga6_A)     0.9037   0.7911   2.0933 (   4  141  171)   0     0.9037   0.7911   21  24
( 1944 1gt9_1)  ( 1793 1gci  )     0.7617   0.8884   3.1196 (   2   95  120)   0     0.7617   0.8884   21  18
( 1944 1gt9_1)  ( 1944 1gt9_1)     1.0000   1.0000   0.0000 (   0  181  210)   0     1.0000   1.0000   21  21
( 1944 1gt9_1)  ( 2456 1ic6_A)     0.7141   0.9367   2.9870 (   2   83  105)   0     0.7141   0.9367   21  16
( 1944 1gt9_1)  ( 5568 1r64_A)     0.7139   0.8325   4.2631 (   2   81  105)   0     0.7139   0.8325   21  18

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