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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6075 1upa_A)  (  370 1bfd  )     0.7853   0.9158   2.3778 (   1   38   55)   0     0.7853   0.9158   14  12
( 6075 1upa_A)  (  747 1d4o_A)     0.7673   0.8786   3.0626 (   3   42   55)   0     0.7673   0.8786   14  12
( 6075 1upa_A)  (  842 1dhs  )     0.6692   0.4304   2.3852 (   3   29   45)   0     0.6692   0.4304   14  23
( 6075 1upa_A)  ( 2765 1j8f_A)     0.7590   0.4970   2.9897 (   3   38   55)   0     0.7590   0.4970   14  22
( 6075 1upa_A)  ( 3045 1jsc_A)     0.7654   0.8174   3.6047 (   3   41   55)   0     0.7654   0.8174   14  13
( 6075 1upa_A)  ( 3802 1m2k_A)     0.7614   0.5734   3.1162 (   3   39   55)   0     0.7796   0.5776   14  19
( 6075 1upa_A)  ( 4562 1o97_D)     0.5000   0.7000   2.0004 (   0   10   21)   0     0.5000   0.7000   14  10
( 6075 1upa_A)  ( 4795 1ovm_A)     0.6336   0.7305   2.4280 (   2   26   36)   0     0.6493   0.7305   14  12
( 6075 1upa_A)  ( 4847 1ozh_A)     0.7814   0.9075   3.1531 (   2   41   55)   0     0.7814   0.9075   14  12
( 6075 1upa_A)  ( 5072 1pox_A)     0.7415   0.7849   3.0180 (   4   44   55)   0     0.7415   0.7849   14  13
( 6075 1upa_A)  ( 5124 1pvd_A)     0.7379   0.7379   2.6002 (   4   43   55)   0     0.7379   0.7379   14  14
( 6075 1upa_A)  ( 5172 1q14_A)     0.7590   0.4970   2.3491 (   3   38   55)   0     0.7611   0.4973   14  22
( 6075 1upa_A)  ( 5771 1s5p_A)     0.5724   0.5222   2.1573 (   3   22   36)   0     0.7002   0.6176   14  16
( 6075 1upa_A)  ( 6075 1upa_A)     1.0000   1.0000   0.0000 (   0   78   91)   0     1.0000   1.0000   14  14
( 6075 1upa_A)  ( 6376 1zpd_A)     0.6303   0.6743   2.1758 (   2   24   36)   0     0.6303   0.6743   14  13

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