------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6576 3lad_A) ( 281 1b37_A) 0.6241 0.3962 3.8864 ( 3 27 45) 0 0.6241 0.3962 15 25 ( 6576 3lad_A) ( 594 1chu_A) 0.7280 0.7280 4.7887 ( 2 36 55) 0 0.7280 0.7280 15 15 ( 6576 3lad_A) ( 756 1d5t_A) 0.7256 0.4394 5.6544 ( 2 33 55) 0 0.7256 0.4394 15 25 ( 6576 3lad_A) ( 767 1d7y_A) 0.7800 0.7800 1.9305 ( 3 42 66) 0 0.7800 0.7800 15 15 ( 6576 3lad_A) ( 1092 1ebd_A) 0.5990 0.8929 4.5263 ( 1 22 36) 0 0.6655 0.9915 15 10 ( 6576 3lad_A) ( 1201 1el5_A) 0.7429 0.5593 5.8701 ( 4 42 66) 0 0.7429 0.5593 15 21 ( 6576 3lad_A) ( 1439 1f8r_A) 0.6291 0.3432 3.8367 ( 3 28 45) 0 0.6291 0.3432 15 29 ( 6576 3lad_A) ( 1465 1fcd_A) 0.8450 0.8450 4.7382 ( 3 46 78) 0 0.8450 0.8450 15 15 ( 6576 3lad_A) ( 1466 1fcd_A) 0.5999 0.8992 4.3394 ( 0 23 36) 0 0.6664 0.9980 15 10 ( 6576 3lad_A) ( 1478 1fec_A) 0.9895 0.9299 2.1092 ( 3 66 105) 0 0.9895 0.9299 15 16 ( 6576 3lad_A) ( 1479 1fec_A) 0.5992 0.8145 4.3153 ( 1 23 36) 0 0.6657 0.9045 15 11 ( 6576 3lad_A) ( 1544 1fl2_A) 0.8035 0.8035 3.4342 ( 4 45 78) 0 0.8035 0.8035 15 15 ( 6576 3lad_A) ( 1545 1fl2_A) 0.2667 0.3333 7.2840 ( 0 2 6) 0 0.7927 0.9783 15 12 ( 6576 3lad_A) ( 1896 1gpe_A) 0.6926 0.4729 5.1432 ( 3 31 55) 0 0.6926 0.4729 15 23 ( 6576 3lad_A) ( 2112 1h6v_A) 0.9150 0.9150 5.4669 ( 3 54 91) 0 0.9150 0.9150 15 15 ( 6576 3lad_A) ( 2113 1h6v_A) 0.5987 0.8120 4.5404 ( 1 20 36) 0 0.5987 0.8120 15 11 ( 6576 3lad_A) ( 2128 1h7w_A) 0.4666 0.5383 5.6010 ( 0 13 21) 0 0.6580 0.7520 15 13 ( 6576 3lad_A) ( 2837 1jeh_A) 0.5993 0.8951 3.8812 ( 1 24 36) 0 0.6659 0.9940 15 10 ( 6576 3lad_A) ( 2994 1jnr_A) 0.6661 0.5261 3.2113 ( 1 28 45) 0 0.6661 0.5261 15 19 ( 6576 3lad_A) ( 3060 1ju2_A) 0.2667 0.1600 4.4086 ( 0 4 6) 0 0.3332 0.2991 15 25 ( 6576 3lad_A) ( 3113 1k0i_A) 0.7097 0.4963 3.6006 ( 3 36 55) 0 0.7097 0.5127 15 22 ( 6576 3lad_A) ( 3270 1kdg_A) 0.7372 0.5829 7.0425 ( 4 41 66) 0 0.7372 0.5829 15 20 ( 6576 3lad_A) ( 3702 1lqt_A) 0.3333 0.2631 7.1098 ( 0 7 10) 0 0.7269 0.5769 15 19 ( 6576 3lad_A) ( 3728 1ltx_R) 0.6631 0.4175 4.6474 ( 4 35 55) 0 0.6631 0.4355 15 26 ( 6576 3lad_A) ( 3751 1lvl ) 0.5333 0.8884 3.9033 ( 0 15 28) 0 0.5999 0.9985 15 9 ( 6576 3lad_A) ( 3859 1m6i_A) 0.9288 0.6989 4.9950 ( 2 56 91) 0 0.9288 0.6989 15 20 ( 6576 3lad_A) ( 3860 1m6i_A) 0.2667 0.2667 6.5133 ( 0 3 6) 0 0.8075 0.8075 15 15 ( 6576 3lad_A) ( 3989 1mo9_A) 0.8623 0.7624 2.2568 ( 2 46 78) 0 0.8623 0.7624 15 17 ( 6576 3lad_A) ( 3990 1mo9_A) 0.2666 0.3632 11.7638 ( 0 4 6) 0 0.6970 0.8765 15 11 ( 6576 3lad_A) ( 4127 1n4w_A) 0.7475 0.5146 5.4427 ( 4 43 66) 0 0.7475 0.5146 15 23 ( 6576 3lad_A) ( 4213 1nek_A) 0.7987 0.5216 5.4180 ( 1 42 66) 0 0.7987 0.5216 15 23 ( 6576 3lad_A) ( 4237 1ng4_A) 0.7040 0.5179 4.5515 ( 3 34 55) 0 0.7040 0.5179 15 21 ( 6576 3lad_A) ( 4257 1nhp ) 0.6182 0.7450 5.0275 ( 3 26 45) 0 0.6182 0.7450 15 11 ( 6576 3lad_A) ( 4258 1nhp ) 0.2667 0.4000 5.8238 ( 0 1 6) 0 0.6659 0.9944 15 10 ( 6576 3lad_A) ( 4559 1o94_A) 0.5904 0.6384 4.2679 ( 4 30 45) 0 0.5920 0.6384 15 13 ( 6576 3lad_A) ( 4680 1ojt ) 0.5991 0.7472 4.3806 ( 1 22 36) 0 0.7987 0.9962 15 12 ( 6576 3lad_A) ( 4728 1onf_A) 0.5992 0.8145 4.2511 ( 1 23 36) 0 0.6654 0.9034 15 11 ( 6576 3lad_A) ( 5024 1pj5_A) 0.7040 0.5179 4.7193 ( 3 34 55) 0 0.7274 0.5554 15 21 ( 6576 3lad_A) ( 5057 1pn0_A) 0.6878 0.4924 5.1052 ( 3 30 55) 0 0.6878 0.4924 15 22 ( 6576 3lad_A) ( 5095 1ps9_A) 0.4506 0.4779 3.9607 ( 2 15 21) 0 0.7813 0.8312 15 14 ( 6576 3lad_A) ( 5181 1q1r_A) 0.7492 0.6934 4.4814 ( 5 46 78) 0 0.7492 0.6934 15 17 ( 6576 3lad_A) ( 5182 1q1r_A) 0.3021 0.3556 7.4478 ( 1 4 10) 0 0.7275 0.9736 15 11 ( 6576 3lad_A) ( 5262 1q9i_A) 0.7390 0.5350 7.6692 ( 7 59 91) 0 0.7390 0.5350 15 25 ( 6576 3lad_A) ( 5370 1qla_A) 0.7287 0.5229 4.0927 ( 2 37 55) 0 0.7287 0.5229 15 21 ( 6576 3lad_A) ( 5760 1s3e_A) 0.6241 0.3678 3.9954 ( 3 27 45) 0 0.6241 0.3821 15 27 ( 6576 3lad_A) ( 5803 1sez_A) 0.5984 0.3748 4.2474 ( 1 19 36) 0 0.6452 0.4145 15 24 ( 6576 3lad_A) ( 5930 1trb ) 0.6570 0.8053 3.8353 ( 2 27 45) 0 0.6570 0.8053 15 12 ( 6576 3lad_A) ( 5931 1trb ) 0.2667 0.3636 5.9607 ( 0 1 6) 0 0.6658 0.9052 15 11 ( 6576 3lad_A) ( 6209 1vdc ) 0.2667 0.3636 7.2335 ( 0 3 6) 0 0.6554 0.8608 15 11 ( 6576 3lad_A) ( 6572 3grs ) 0.6594 0.8770 1.2755 ( 2 29 45) 0 0.6594 0.8770 15 11 ( 6576 3lad_A) ( 6573 3grs ) 0.5993 0.8151 3.9432 ( 1 24 36) 0 0.6658 0.9048 15 11 ( 6576 3lad_A) ( 6576 3lad_A) 1.0000 1.0000 0.0000 ( 0 73 105) 0 1.0000 1.0000 15 15 ( 6576 3lad_A) ( 6577 3lad_A) 0.2667 0.3636 5.8097 ( 0 1 6) 0 0.7261 0.9678 15 11 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