------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5931 1trb ) ( 281 1b37_A) 0.4545 0.2000 2.3178 ( 0 7 10) 0 0.7267 0.3868 11 25 ( 5931 1trb ) ( 594 1chu_A) 0.4432 0.3308 7.7248 ( 1 8 10) 0 0.9203 0.7138 11 15 ( 5931 1trb ) ( 756 1d5t_A) 0.4545 0.2000 2.2593 ( 0 7 10) 0 0.7740 0.3967 11 25 ( 5931 1trb ) ( 767 1d7y_A) 0.4545 0.3333 3.7022 ( 0 5 10) 0 0.8178 0.5999 11 15 ( 5931 1trb ) ( 1092 1ebd_A) 0.9088 0.9995 3.4304 ( 0 25 45) 0 0.9088 0.9995 11 10 ( 5931 1trb ) ( 1201 1el5_A) 0.5375 0.2854 2.4202 ( 1 11 15) 0 0.8865 0.4797 11 21 ( 5931 1trb ) ( 1439 1f8r_A) 0.4545 0.1724 2.1958 ( 0 7 10) 0 0.7842 0.3411 11 29 ( 5931 1trb ) ( 1465 1fcd_A) 0.4545 0.3333 4.2881 ( 0 6 10) 0 0.9087 0.6747 11 15 ( 5931 1trb ) ( 1466 1fcd_A) 0.9070 0.9967 2.9366 ( 1 30 45) 0 0.9070 0.9967 11 10 ( 5931 1trb ) ( 1478 1fec_A) 0.3632 0.2499 11.2766 ( 0 1 6) 0 0.9958 0.6869 11 16 ( 5931 1trb ) ( 1479 1fec_A) 0.9088 0.9088 3.2562 ( 0 25 45) 0 0.9088 0.9088 11 11 ( 5931 1trb ) ( 1544 1fl2_A) 0.6363 0.4667 3.1712 ( 0 14 21) 0 0.9062 0.7071 11 15 ( 5931 1trb ) ( 1545 1fl2_A) 0.9091 0.8333 1.6100 ( 0 29 45) 0 0.9091 0.8333 11 12 ( 5931 1trb ) ( 1896 1gpe_A) 0.3636 0.1739 5.2289 ( 0 5 6) 0 0.9045 0.4347 11 23 ( 5931 1trb ) ( 2112 1h6v_A) 0.5453 0.4000 4.9912 ( 0 11 15) 0 0.9074 0.6663 11 15 ( 5931 1trb ) ( 2113 1h6v_A) 0.9994 0.9994 3.5032 ( 0 32 55) 0 0.9994 0.9994 11 11 ( 5931 1trb ) ( 2128 1h7w_A) 0.9070 0.7683 2.7834 ( 1 30 45) 0 0.9070 0.7683 11 13 ( 5931 1trb ) ( 2837 1jeh_A) 0.9088 0.9995 3.3196 ( 0 26 45) 0 0.9088 0.9995 11 10 ( 5931 1trb ) ( 2994 1jnr_A) 0.4545 0.2632 2.7557 ( 0 7 10) 0 0.7791 0.5540 11 19 ( 5931 1trb ) ( 3060 1ju2_A) 0.5454 0.2400 2.9425 ( 0 10 15) 0 0.9061 0.4000 11 25 ( 5931 1trb ) ( 3113 1k0i_A) 0.8161 0.4090 2.3805 ( 1 26 36) 0 0.9071 0.4545 11 22 ( 5931 1trb ) ( 3270 1kdg_A) 0.8181 0.4500 2.4079 ( 0 22 36) 0 0.9063 0.4999 11 20 ( 5931 1trb ) ( 3702 1lqt_A) 0.7263 0.4210 5.8807 ( 0 18 28) 0 0.9081 0.5262 11 19 ( 5931 1trb ) ( 3728 1ltx_R) 0.3191 0.1530 10.2929 ( 1 4 6) 0 0.8723 0.3841 11 26 ( 5931 1trb ) ( 3751 1lvl ) 0.8180 0.9994 3.4881 ( 0 18 36) 0 0.8180 0.9994 11 9 ( 5931 1trb ) ( 3859 1m6i_A) 0.5587 0.3447 3.7111 ( 2 14 21) 0 0.8177 0.4924 11 20 ( 5931 1trb ) ( 3860 1m6i_A) 0.9771 0.7283 3.2200 ( 2 36 55) 0 0.9771 0.7283 11 15 ( 5931 1trb ) ( 3989 1mo9_A) 0.3636 0.2353 6.7459 ( 0 3 6) 0 0.9073 0.5880 11 17 ( 5931 1trb ) ( 3990 1mo9_A) 0.8181 0.8181 2.2712 ( 0 23 36) 0 0.8181 0.8181 11 11 ( 5931 1trb ) ( 4127 1n4w_A) 0.3628 0.1739 13.5717 ( 0 1 6) 0 0.9062 0.4347 11 23 ( 5931 1trb ) ( 4213 1nek_A) 0.3417 0.1733 10.1557 ( 1 5 6) 0 0.9078 0.4749 11 23 ( 5931 1trb ) ( 4237 1ng4_A) 0.4525 0.2380 12.9773 ( 0 7 10) 0 0.7865 0.4694 11 21 ( 5931 1trb ) ( 4257 1nhp ) 0.8149 0.8149 2.7045 ( 1 23 36) 0 0.8149 0.8149 11 11 ( 5931 1trb ) ( 4258 1nhp ) 0.9089 0.9996 3.1650 ( 0 30 45) 0 0.9089 0.9996 11 10 ( 5931 1trb ) ( 4559 1o94_A) 0.9071 0.7684 5.3642 ( 0 30 45) 0 0.9071 0.7684 11 13 ( 5931 1trb ) ( 4680 1ojt ) 0.8545 0.7965 3.1873 ( 2 25 45) 0 0.8545 0.7965 11 12 ( 5931 1trb ) ( 4728 1onf_A) 0.9089 0.9089 3.0083 ( 0 24 45) 0 0.9089 0.9089 11 11 ( 5931 1trb ) ( 5024 1pj5_A) 0.4531 0.2380 11.7555 ( 0 8 10) 0 0.9067 0.4761 11 21 ( 5931 1trb ) ( 5057 1pn0_A) 0.3631 0.1818 11.9795 ( 0 1 6) 0 0.9041 0.4544 11 22 ( 5931 1trb ) ( 5095 1ps9_A) 0.9054 0.7132 5.4383 ( 1 31 45) 0 0.9054 0.7132 11 14 ( 5931 1trb ) ( 5181 1q1r_A) 0.5454 0.3529 4.0606 ( 0 9 15) 0 0.9068 0.5880 11 17 ( 5931 1trb ) ( 5182 1q1r_A) 0.9089 0.9089 3.0058 ( 0 28 45) 0 0.9089 0.9089 11 11 ( 5931 1trb ) ( 5262 1q9i_A) 0.3635 0.1600 7.8085 ( 0 2 6) 0 0.9798 0.4397 11 25 ( 5931 1trb ) ( 5370 1qla_A) 0.4545 0.2381 5.6599 ( 0 6 10) 0 0.9068 0.5111 11 21 ( 5931 1trb ) ( 5760 1s3e_A) 0.4545 0.1852 4.3618 ( 0 5 10) 0 0.6658 0.3643 11 27 ( 5931 1trb ) ( 5803 1sez_A) 0.4545 0.2083 4.2271 ( 0 5 10) 0 0.5744 0.3278 11 24 ( 5931 1trb ) ( 5930 1trb ) 0.8181 0.7500 2.5639 ( 0 25 36) 0 0.8181 0.7500 11 12 ( 5931 1trb ) ( 5931 1trb ) 1.0000 1.0000 0.0000 ( 0 42 55) 0 1.0000 1.0000 11 11 ( 5931 1trb ) ( 6209 1vdc ) 0.9090 0.9090 2.1049 ( 0 31 45) 0 0.9090 0.9090 11 11 ( 5931 1trb ) ( 6572 3grs ) 0.4545 0.4545 4.8903 ( 0 6 10) 0 0.7269 0.7269 11 11 ( 5931 1trb ) ( 6573 3grs ) 0.9087 0.9087 3.4714 ( 0 25 45) 0 0.9087 0.9087 11 11 ( 5931 1trb ) ( 6576 3lad_A) 0.3636 0.2667 5.9607 ( 0 1 6) 0 0.9052 0.6658 11 15 ( 5931 1trb ) ( 6577 3lad_A) 0.9088 0.9088 3.4218 ( 0 27 45) 0 0.9088 0.9088 11 11 -------------------------------------------------------------------------------------------------------------------------