------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4258 1nhp ) ( 281 1b37_A) 0.5000 0.2000 2.5523 ( 0 6 10) 0 0.5819 0.3824 10 25 ( 4258 1nhp ) ( 594 1chu_A) 0.4000 0.2667 4.6683 ( 0 4 6) 0 0.9989 0.6665 10 15 ( 4258 1nhp ) ( 756 1d5t_A) 0.5000 0.2000 3.6614 ( 0 6 10) 0 0.7747 0.3956 10 25 ( 4258 1nhp ) ( 767 1d7y_A) 0.8000 0.5333 1.3816 ( 0 18 28) 0 0.8999 0.6000 10 15 ( 4258 1nhp ) ( 1092 1ebd_A) 0.9943 0.9943 2.9651 ( 1 26 45) 0 0.9943 0.9943 10 10 ( 4258 1nhp ) ( 1201 1el5_A) 0.8999 0.4286 2.8426 ( 0 22 36) 0 0.9552 0.4750 10 21 ( 4258 1nhp ) ( 1439 1f8r_A) 0.3999 0.1379 6.9797 ( 0 2 6) 0 0.5645 0.3348 10 29 ( 4258 1nhp ) ( 1465 1fcd_A) 0.4995 0.3333 7.9117 ( 0 5 10) 0 0.9996 0.6666 10 15 ( 4258 1nhp ) ( 1466 1fcd_A) 0.9968 0.9968 2.2417 ( 1 30 45) 0 0.9968 0.9968 10 10 ( 4258 1nhp ) ( 1478 1fec_A) 0.8995 0.5625 3.8604 ( 0 22 36) 0 0.9984 0.6249 10 16 ( 4258 1nhp ) ( 1479 1fec_A) 0.9945 0.9057 2.1482 ( 1 26 45) 0 0.9956 0.9064 10 11 ( 4258 1nhp ) ( 1544 1fl2_A) 0.8999 0.6000 2.5566 ( 0 21 36) 0 0.9947 0.6660 10 15 ( 4258 1nhp ) ( 1545 1fl2_A) 0.9997 0.8332 2.9808 ( 0 26 45) 0 0.9997 0.8332 10 12 ( 4258 1nhp ) ( 1896 1gpe_A) 0.4000 0.1739 5.9116 ( 0 4 6) 0 0.9903 0.4346 10 23 ( 4258 1nhp ) ( 2112 1h6v_A) 0.8995 0.5999 3.8812 ( 0 21 36) 0 0.9983 0.6664 10 15 ( 4258 1nhp ) ( 2113 1h6v_A) 0.9943 0.9055 3.1149 ( 1 26 45) 0 0.9943 0.9055 10 11 ( 4258 1nhp ) ( 2128 1h7w_A) 0.8995 0.6922 3.9270 ( 0 21 36) 0 0.8995 0.6922 10 13 ( 4258 1nhp ) ( 2837 1jeh_A) 0.9951 0.9951 2.7561 ( 1 27 45) 0 0.9951 0.9951 10 10 ( 4258 1nhp ) ( 2994 1jnr_A) 0.5000 0.2632 3.5113 ( 0 6 10) 0 0.9260 0.5227 10 19 ( 4258 1nhp ) ( 3060 1ju2_A) 0.8997 0.3600 3.2703 ( 0 20 36) 0 0.9268 0.3991 10 25 ( 4258 1nhp ) ( 3113 1k0i_A) 0.8936 0.4090 3.2209 ( 1 22 36) 0 0.9496 0.4534 10 22 ( 4258 1nhp ) ( 3270 1kdg_A) 0.3998 0.2000 8.6197 ( 0 0 6) 0 0.9942 0.4998 10 20 ( 4258 1nhp ) ( 3702 1lqt_A) 0.9488 0.5240 4.7733 ( 2 29 45) 0 0.9974 0.5262 10 19 ( 4258 1nhp ) ( 3728 1ltx_R) 0.4000 0.1538 4.2634 ( 0 1 6) 0 0.9357 0.3840 10 26 ( 4258 1nhp ) ( 3751 1lvl ) 0.8909 0.9848 2.4839 ( 1 20 36) 0 0.8909 0.9848 10 9 ( 4258 1nhp ) ( 3859 1m6i_A) 0.7924 0.3998 1.7521 ( 1 18 28) 0 0.8954 0.4499 10 20 ( 4258 1nhp ) ( 3860 1m6i_A) 0.9964 0.6662 1.8915 ( 1 29 45) 0 0.9964 0.6662 10 15 ( 4258 1nhp ) ( 3989 1mo9_A) 0.4000 0.2353 5.6342 ( 0 0 6) 0 0.9984 0.5881 10 17 ( 4258 1nhp ) ( 3990 1mo9_A) 0.8999 0.8181 2.2911 ( 0 22 36) 0 0.8999 0.8181 10 11 ( 4258 1nhp ) ( 4127 1n4w_A) 0.3997 0.1739 9.3215 ( 0 1 6) 0 0.9949 0.4347 10 23 ( 4258 1nhp ) ( 4213 1nek_A) 0.3999 0.1739 6.7982 ( 0 5 6) 0 0.9978 0.4347 10 23 ( 4258 1nhp ) ( 4237 1ng4_A) 0.3999 0.1905 6.8125 ( 0 5 6) 0 0.5819 0.4380 10 21 ( 4258 1nhp ) ( 4257 1nhp ) 0.8924 0.8135 2.7240 ( 1 21 36) 0 0.8924 0.8135 10 11 ( 4258 1nhp ) ( 4258 1nhp ) 1.0000 1.0000 0.0000 ( 0 32 45) 0 1.0000 1.0000 10 10 ( 4258 1nhp ) ( 4559 1o94_A) 0.8999 0.6923 2.2151 ( 0 23 36) 0 0.8999 0.6923 10 13 ( 4258 1nhp ) ( 4680 1ojt ) 0.8079 0.7078 2.0341 ( 2 21 36) 0 0.8079 0.7140 10 12 ( 4258 1nhp ) ( 4728 1onf_A) 0.9945 0.9057 2.1572 ( 1 26 45) 0 0.9945 0.9057 10 11 ( 4258 1nhp ) ( 5024 1pj5_A) 0.4203 0.2351 7.8955 ( 1 5 10) 0 0.9943 0.4760 10 21 ( 4258 1nhp ) ( 5057 1pn0_A) 0.3999 0.1818 6.0490 ( 0 1 6) 0 0.9892 0.4543 10 22 ( 4258 1nhp ) ( 5095 1ps9_A) 0.8937 0.6417 2.8515 ( 1 22 36) 0 0.8937 0.6417 10 14 ( 4258 1nhp ) ( 5181 1q1r_A) 0.9000 0.5294 1.7023 ( 0 22 36) 0 0.9958 0.5879 10 17 ( 4258 1nhp ) ( 5182 1q1r_A) 0.9999 0.9091 1.4897 ( 0 30 45) 0 0.9999 0.9091 10 11 ( 4258 1nhp ) ( 5262 1q9i_A) 0.3999 0.1600 6.8067 ( 0 3 6) 0 0.9978 0.4000 10 25 ( 4258 1nhp ) ( 5370 1qla_A) 0.4000 0.1905 5.1198 ( 0 1 6) 0 0.9490 0.4748 10 21 ( 4258 1nhp ) ( 5760 1s3e_A) 0.5000 0.1852 2.7276 ( 0 6 10) 0 0.6230 0.3407 10 27 ( 4258 1nhp ) ( 5803 1sez_A) 0.5000 0.2083 3.0047 ( 0 6 10) 0 0.5000 0.2083 10 24 ( 4258 1nhp ) ( 5930 1trb ) 0.8999 0.7500 2.6884 ( 0 23 36) 0 0.8999 0.7500 10 12 ( 4258 1nhp ) ( 5931 1trb ) 0.9996 0.9089 3.1650 ( 0 30 45) 0 0.9996 0.9089 10 11 ( 4258 1nhp ) ( 6209 1vdc ) 0.9941 0.9054 3.3704 ( 1 26 45) 0 0.9941 0.9054 10 11 ( 4258 1nhp ) ( 6572 3grs ) 0.7998 0.7271 3.7262 ( 0 16 28) 0 0.7998 0.7271 10 11 ( 4258 1nhp ) ( 6573 3grs ) 0.9942 0.9055 3.1850 ( 1 26 45) 0 0.9942 0.9055 10 11 ( 4258 1nhp ) ( 6576 3lad_A) 0.4000 0.2667 5.8238 ( 0 1 6) 0 0.9944 0.6659 10 15 ( 4258 1nhp ) ( 6577 3lad_A) 0.9958 0.9065 2.5560 ( 1 28 45) 0 0.9958 0.9065 10 11 -------------------------------------------------------------------------------------------------------------------------