------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4257 1nhp ) ( 281 1b37_A) 0.4535 0.2000 10.9088 ( 0 7 10) 0 0.4545 0.2000 11 25 ( 4257 1nhp ) ( 594 1chu_A) 0.8143 0.5992 2.4684 ( 1 22 36) 0 0.8143 0.5992 11 15 ( 4257 1nhp ) ( 756 1d5t_A) 0.7232 0.3199 4.0770 ( 1 19 28) 0 0.8154 0.3600 11 25 ( 4257 1nhp ) ( 767 1d7y_A) 0.8149 0.5993 2.2266 ( 1 23 36) 0 0.8149 0.5993 11 15 ( 4257 1nhp ) ( 1092 1ebd_A) 0.8142 0.8937 2.6314 ( 1 22 36) 0 0.8142 0.8937 11 10 ( 4257 1nhp ) ( 1201 1el5_A) 0.8153 0.4285 3.3895 ( 1 24 36) 0 0.8153 0.4285 11 21 ( 4257 1nhp ) ( 1439 1f8r_A) 0.8173 0.3103 5.0501 ( 0 24 36) 0 0.8173 0.3317 11 29 ( 4257 1nhp ) ( 1465 1fcd_A) 0.9720 0.7271 2.3839 ( 2 34 55) 0 0.9720 0.7271 11 15 ( 4257 1nhp ) ( 1466 1fcd_A) 0.7652 0.8203 3.3232 ( 2 22 36) 0 0.7652 0.8203 11 10 ( 4257 1nhp ) ( 1478 1fec_A) 0.7489 0.6226 5.9930 ( 4 33 55) 0 0.7489 0.6226 11 16 ( 4257 1nhp ) ( 1479 1fec_A) 0.8148 0.8148 3.1033 ( 1 23 36) 0 0.8148 0.8148 11 11 ( 4257 1nhp ) ( 1544 1fl2_A) 0.9047 0.6657 3.7357 ( 1 25 45) 0 0.9047 0.6657 11 15 ( 4257 1nhp ) ( 1545 1fl2_A) 0.8143 0.7475 2.4727 ( 1 22 36) 0 0.8367 0.7838 11 12 ( 4257 1nhp ) ( 1896 1gpe_A) 0.8122 0.3912 4.0163 ( 1 20 36) 0 0.8122 0.3912 11 23 ( 4257 1nhp ) ( 2112 1h6v_A) 0.8151 0.5993 4.8575 ( 1 25 36) 0 0.8151 0.6290 11 15 ( 4257 1nhp ) ( 2113 1h6v_A) 0.8124 0.8124 3.1770 ( 1 20 36) 0 0.8124 0.8124 11 11 ( 4257 1nhp ) ( 2128 1h7w_A) 0.8142 0.6905 3.3006 ( 1 22 36) 0 0.8142 0.6905 11 13 ( 4257 1nhp ) ( 2837 1jeh_A) 0.8149 0.8947 2.4930 ( 1 23 36) 0 0.8149 0.8947 11 10 ( 4257 1nhp ) ( 2994 1jnr_A) 0.7271 0.4210 3.8181 ( 0 17 28) 0 0.8149 0.4735 11 19 ( 4257 1nhp ) ( 3060 1ju2_A) 0.8124 0.3599 3.0425 ( 1 20 36) 0 0.8124 0.3940 11 25 ( 4257 1nhp ) ( 3113 1k0i_A) 0.8180 0.4091 3.1637 ( 0 24 36) 0 0.8180 0.4091 11 22 ( 4257 1nhp ) ( 3270 1kdg_A) 0.8140 0.4498 3.7838 ( 1 22 36) 0 0.8140 0.4751 11 20 ( 4257 1nhp ) ( 3702 1lqt_A) 0.8150 0.4735 4.1762 ( 1 24 36) 0 0.8150 0.4735 11 19 ( 4257 1nhp ) ( 3728 1ltx_R) 0.8178 0.3461 4.0087 ( 0 23 36) 0 0.8178 0.3461 11 26 ( 4257 1nhp ) ( 3751 1lvl ) 0.7146 0.8560 2.5561 ( 1 14 28) 0 0.7146 0.8560 11 9 ( 4257 1nhp ) ( 3859 1m6i_A) 0.8807 0.4985 2.5396 ( 2 30 45) 0 0.9067 0.4999 11 20 ( 4257 1nhp ) ( 3860 1m6i_A) 0.7563 0.5850 3.4070 ( 2 21 36) 0 0.7563 0.6041 11 15 ( 4257 1nhp ) ( 3989 1mo9_A) 0.8131 0.5288 5.4870 ( 1 22 36) 0 0.8131 0.5666 11 17 ( 4257 1nhp ) ( 3990 1mo9_A) 0.8142 0.8142 2.8529 ( 1 22 36) 0 0.8142 0.8142 11 11 ( 4257 1nhp ) ( 4127 1n4w_A) 0.8762 0.4339 4.5551 ( 2 29 45) 0 0.9059 0.4500 11 23 ( 4257 1nhp ) ( 4213 1nek_A) 0.8146 0.3912 3.9465 ( 1 23 36) 0 0.8146 0.4297 11 23 ( 4257 1nhp ) ( 4237 1ng4_A) 0.8147 0.4284 3.4752 ( 1 23 36) 0 0.8147 0.4284 11 21 ( 4257 1nhp ) ( 4257 1nhp ) 1.0000 1.0000 0.0000 ( 0 36 55) 0 1.0000 1.0000 11 11 ( 4257 1nhp ) ( 4258 1nhp ) 0.8135 0.8924 2.7240 ( 1 21 36) 0 0.8135 0.8924 11 10 ( 4257 1nhp ) ( 4559 1o94_A) 0.8149 0.6909 2.1757 ( 1 23 36) 0 0.8149 0.6909 11 13 ( 4257 1nhp ) ( 4680 1ojt ) 0.8148 0.7478 3.1541 ( 1 23 36) 0 0.8148 0.7478 11 12 ( 4257 1nhp ) ( 4728 1onf_A) 0.8142 0.8142 2.8351 ( 1 22 36) 0 0.8142 0.8142 11 11 ( 4257 1nhp ) ( 5024 1pj5_A) 0.8152 0.4285 3.5460 ( 1 24 36) 0 0.8152 0.4285 11 21 ( 4257 1nhp ) ( 5057 1pn0_A) 0.3636 0.1818 6.3657 ( 0 2 6) 0 0.9045 0.4544 11 22 ( 4257 1nhp ) ( 5095 1ps9_A) 0.9059 0.7133 3.2824 ( 1 27 45) 0 0.9059 0.7133 11 14 ( 4257 1nhp ) ( 5181 1q1r_A) 0.9559 0.6416 2.2684 ( 2 30 55) 0 0.9559 0.6416 11 17 ( 4257 1nhp ) ( 5182 1q1r_A) 0.8142 0.8142 2.9292 ( 1 22 36) 0 0.8142 0.8142 11 11 ( 4257 1nhp ) ( 5262 1q9i_A) 0.9039 0.3999 6.1487 ( 1 30 45) 0 0.9039 0.4300 11 25 ( 4257 1nhp ) ( 5370 1qla_A) 0.8155 0.4285 4.0368 ( 1 25 36) 0 0.8155 0.4285 11 21 ( 4257 1nhp ) ( 5760 1s3e_A) 0.4545 0.1852 3.4307 ( 0 7 10) 0 0.7788 0.3328 11 27 ( 4257 1nhp ) ( 5803 1sez_A) 0.3636 0.1667 7.7181 ( 0 4 6) 0 0.3636 0.1667 11 24 ( 4257 1nhp ) ( 5930 1trb ) 0.9053 0.8309 3.6434 ( 1 26 45) 0 0.9053 0.8309 11 12 ( 4257 1nhp ) ( 5931 1trb ) 0.8149 0.8149 2.7045 ( 1 23 36) 0 0.8149 0.8149 11 11 ( 4257 1nhp ) ( 6209 1vdc ) 0.8142 0.8142 2.7500 ( 1 22 36) 0 0.8142 0.8142 11 11 ( 4257 1nhp ) ( 6572 3grs ) 0.7266 0.7266 5.3371 ( 0 17 28) 0 0.7266 0.7266 11 11 ( 4257 1nhp ) ( 6573 3grs ) 0.8148 0.8148 2.8578 ( 1 23 36) 0 0.8148 0.8148 11 11 ( 4257 1nhp ) ( 6576 3lad_A) 0.7450 0.6182 5.0275 ( 3 26 45) 0 0.7450 0.6182 11 15 ( 4257 1nhp ) ( 6577 3lad_A) 0.8143 0.8143 2.4893 ( 1 22 36) 0 0.8143 0.8143 11 11 -------------------------------------------------------------------------------------------------------------------------