------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4237 1ng4_A) ( 281 1b37_A) 0.5864 0.5054 4.3149 ( 6 53 78) 0 0.5864 0.5054 21 25 ( 4237 1ng4_A) ( 594 1chu_A) 0.6186 0.8641 3.5849 ( 2 54 78) 0 0.6957 0.9147 21 15 ( 4237 1ng4_A) ( 756 1d5t_A) 0.6190 0.5200 3.3922 ( 1 54 78) 0 0.7102 0.5983 21 25 ( 4237 1ng4_A) ( 767 1d7y_A) 0.5230 0.7288 2.6824 ( 2 37 55) 0 0.5665 0.7748 21 15 ( 4237 1ng4_A) ( 1092 1ebd_A) 0.4286 0.8998 2.9115 ( 0 23 36) 0 0.4286 0.8998 21 10 ( 4237 1ng4_A) ( 1201 1el5_A) 0.9045 0.9045 3.0597 ( 2 126 171) 0 0.9045 0.9045 21 21 ( 4237 1ng4_A) ( 1439 1f8r_A) 0.2268 0.1700 9.2152 ( 2 7 10) 0 0.6437 0.5004 21 29 ( 4237 1ng4_A) ( 1465 1fcd_A) 0.5671 0.7779 3.5260 ( 3 41 66) 0 0.5671 0.7779 21 15 ( 4237 1ng4_A) ( 1466 1fcd_A) 0.1905 0.3999 6.0897 ( 0 4 6) 0 0.4694 0.8259 21 10 ( 4237 1ng4_A) ( 1478 1fec_A) 0.5704 0.7459 4.8075 ( 2 40 66) 0 0.5704 0.7459 21 16 ( 4237 1ng4_A) ( 1479 1fec_A) 0.4286 0.8181 2.2026 ( 0 23 36) 0 0.4286 0.8181 21 11 ( 4237 1ng4_A) ( 1544 1fl2_A) 0.5714 0.7999 2.9071 ( 0 41 66) 0 0.5714 0.7999 21 15 ( 4237 1ng4_A) ( 1545 1fl2_A) 0.2380 0.4155 12.6410 ( 0 7 10) 0 0.5227 0.8993 21 12 ( 4237 1ng4_A) ( 1896 1gpe_A) 0.4292 0.4215 5.1496 ( 14 63 91) 0 0.4292 0.4215 21 23 ( 4237 1ng4_A) ( 2112 1h6v_A) 0.5700 0.7926 5.6763 ( 2 38 66) 0 0.5700 0.7926 21 15 ( 4237 1ng4_A) ( 2113 1h6v_A) 0.3808 0.7224 3.3296 ( 1 18 28) 0 0.4256 0.7563 21 11 ( 4237 1ng4_A) ( 2128 1h7w_A) 0.2378 0.3815 17.7771 ( 0 8 10) 0 0.5238 0.8455 21 13 ( 4237 1ng4_A) ( 2837 1jeh_A) 0.2380 0.4967 12.9556 ( 0 7 10) 0 0.4286 0.5470 21 10 ( 4237 1ng4_A) ( 2994 1jnr_A) 0.5684 0.6266 3.6477 ( 3 45 66) 0 0.6134 0.6750 21 19 ( 4237 1ng4_A) ( 3060 1ju2_A) 0.3941 0.3828 5.1572 ( 14 57 91) 0 0.3941 0.3828 21 25 ( 4237 1ng4_A) ( 3113 1k0i_A) 0.6610 0.6319 3.4938 ( 4 62 91) 0 0.7245 0.6970 21 22 ( 4237 1ng4_A) ( 3270 1kdg_A) 0.4898 0.4947 3.9059 ( 14 73 105) 0 0.4898 0.4947 21 20 ( 4237 1ng4_A) ( 3702 1lqt_A) 0.2376 0.2624 8.4386 ( 1 8 10) 0 0.5237 0.5787 21 19 ( 4237 1ng4_A) ( 3728 1ltx_R) 0.6665 0.5384 4.2319 ( 1 60 91) 0 0.7319 0.6045 21 26 ( 4237 1ng4_A) ( 3751 1lvl ) 0.3178 0.3721 3.4676 ( 4 15 28) 0 0.3847 0.8632 21 9 ( 4237 1ng4_A) ( 3859 1m6i_A) 0.5637 0.5902 2.7633 ( 4 47 66) 0 0.5637 0.5902 21 20 ( 4237 1ng4_A) ( 3860 1m6i_A) 0.1905 0.2667 7.1777 ( 0 0 6) 0 0.5595 0.7437 21 15 ( 4237 1ng4_A) ( 3989 1mo9_A) 0.5571 0.6676 4.2653 ( 4 40 66) 0 0.5571 0.6676 21 17 ( 4237 1ng4_A) ( 3990 1mo9_A) 0.1905 0.3636 7.0162 ( 0 2 6) 0 0.4762 0.9089 21 11 ( 4237 1ng4_A) ( 4127 1n4w_A) 0.6241 0.5803 4.6020 ( 7 63 91) 0 0.6241 0.5803 21 23 ( 4237 1ng4_A) ( 4213 1nek_A) 0.7398 0.6813 4.2718 ( 7 90 120) 0 0.7398 0.6813 21 23 ( 4237 1ng4_A) ( 4237 1ng4_A) 1.0000 1.0000 0.0000 ( 0 167 210) 0 1.0000 1.0000 21 21 ( 4237 1ng4_A) ( 4257 1nhp ) 0.4284 0.8147 3.4752 ( 1 23 36) 0 0.4284 0.8147 21 11 ( 4237 1ng4_A) ( 4258 1nhp ) 0.1905 0.3999 6.8125 ( 0 5 6) 0 0.4380 0.5819 21 10 ( 4237 1ng4_A) ( 4559 1o94_A) 0.2373 0.3763 3.1601 ( 1 7 10) 0 0.4238 0.4749 21 13 ( 4237 1ng4_A) ( 4680 1ojt ) 0.4187 0.6374 3.2660 ( 3 23 36) 0 0.5064 0.8166 21 12 ( 4237 1ng4_A) ( 4728 1onf_A) 0.4286 0.8181 2.3147 ( 0 23 36) 0 0.4286 0.8181 21 11 ( 4237 1ng4_A) ( 5024 1pj5_A) 0.8999 0.8999 2.5108 ( 5 118 171) 0 0.8999 0.8999 21 21 ( 4237 1ng4_A) ( 5057 1pn0_A) 0.2381 0.2272 10.3938 ( 0 4 10) 0 0.7524 0.7197 21 22 ( 4237 1ng4_A) ( 5095 1ps9_A) 0.1905 0.2857 7.8350 ( 0 6 6) 0 0.4521 0.4824 21 14 ( 4237 1ng4_A) ( 5181 1q1r_A) 0.5706 0.7036 3.4450 ( 2 42 66) 0 0.5706 0.7036 21 17 ( 4237 1ng4_A) ( 5182 1q1r_A) 0.2852 0.5337 6.5854 ( 1 10 15) 0 0.5227 0.9744 21 11 ( 4237 1ng4_A) ( 5262 1q9i_A) 0.7107 0.5985 4.1392 ( 4 77 105) 0 0.7107 0.5985 21 25 ( 4237 1ng4_A) ( 5370 1qla_A) 0.7128 0.7128 4.5440 ( 3 75 105) 0 0.7128 0.7128 21 21 ( 4237 1ng4_A) ( 5760 1s3e_A) 0.3790 0.3526 3.5258 ( 12 48 66) 0 0.6282 0.5259 21 27 ( 4237 1ng4_A) ( 5803 1sez_A) 0.2381 0.2083 6.0109 ( 0 8 10) 0 0.3759 0.3307 21 24 ( 4237 1ng4_A) ( 5930 1trb ) 0.4286 0.7500 1.8487 ( 0 24 36) 0 0.4286 0.7500 21 12 ( 4237 1ng4_A) ( 5931 1trb ) 0.2381 0.4545 5.7727 ( 0 6 10) 0 0.4748 0.8766 21 11 ( 4237 1ng4_A) ( 6209 1vdc ) 0.2852 0.5340 2.9730 ( 1 10 15) 0 0.4762 0.9088 21 11 ( 4237 1ng4_A) ( 6572 3grs ) 0.3809 0.7265 5.5913 ( 0 16 28) 0 0.4169 0.7265 21 11 ( 4237 1ng4_A) ( 6573 3grs ) 0.3808 0.7233 3.2370 ( 1 19 28) 0 0.3920 0.7233 21 11 ( 4237 1ng4_A) ( 6576 3lad_A) 0.5179 0.7040 4.5515 ( 3 34 55) 0 0.5179 0.7040 21 15 ( 4237 1ng4_A) ( 6577 3lad_A) 0.2380 0.4528 12.4076 ( 0 8 10) 0 0.5223 0.9645 21 11 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