------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4213 1nek_A) ( 281 1b37_A) 0.2607 0.2399 4.0997 ( 1 11 15) 0 0.5576 0.5149 23 25 ( 4213 1nek_A) ( 594 1chu_A) 0.6087 0.9330 3.0419 ( 1 69 91) 0 0.6087 0.9330 23 15 ( 4213 1nek_A) ( 756 1d5t_A) 0.6517 0.5997 5.3010 ( 2 79 105) 0 0.6517 0.5997 23 25 ( 4213 1nek_A) ( 767 1d7y_A) 0.2347 0.2390 5.0013 ( 10 24 45) 0 0.5217 0.7994 23 15 ( 4213 1nek_A) ( 1092 1ebd_A) 0.3913 0.8998 3.1942 ( 0 23 36) 0 0.3913 0.8998 23 10 ( 4213 1nek_A) ( 1201 1el5_A) 0.6514 0.7130 4.9492 ( 3 81 105) 0 0.6514 0.7130 23 21 ( 4213 1nek_A) ( 1439 1f8r_A) 0.3042 0.2413 3.9387 ( 1 16 21) 0 0.5640 0.4479 23 29 ( 4213 1nek_A) ( 1465 1fcd_A) 0.1739 0.2667 4.5674 ( 0 5 6) 0 0.5632 0.8499 23 15 ( 4213 1nek_A) ( 1466 1fcd_A) 0.1739 0.4000 5.7409 ( 0 3 6) 0 0.4347 0.9936 23 10 ( 4213 1nek_A) ( 1478 1fec_A) 0.3043 0.4375 2.9292 ( 0 16 21) 0 0.5636 0.8027 23 16 ( 4213 1nek_A) ( 1479 1fec_A) 0.4314 0.8076 5.0724 ( 3 31 45) 0 0.4314 0.8076 23 11 ( 4213 1nek_A) ( 1544 1fl2_A) 0.1739 0.2667 6.7494 ( 0 0 6) 0 0.5682 0.8519 23 15 ( 4213 1nek_A) ( 1545 1fl2_A) 0.2171 0.4092 7.8339 ( 1 8 10) 0 0.4669 0.8328 23 12 ( 4213 1nek_A) ( 1896 1gpe_A) 0.4266 0.4266 5.8611 ( 14 64 91) 0 0.5934 0.5934 23 23 ( 4213 1nek_A) ( 2112 1h6v_A) 0.5216 0.7991 5.1999 ( 0 40 66) 0 0.5216 0.7991 23 15 ( 4213 1nek_A) ( 2113 1h6v_A) 0.3913 0.8181 2.8342 ( 0 21 36) 0 0.4291 0.8181 23 11 ( 4213 1nek_A) ( 2128 1h7w_A) 0.1739 0.3077 5.9297 ( 0 1 6) 0 0.5201 0.8964 23 13 ( 4213 1nek_A) ( 2837 1jeh_A) 0.3913 0.8999 2.7885 ( 0 24 36) 0 0.3913 0.8999 23 10 ( 4213 1nek_A) ( 2994 1jnr_A) 0.6955 0.8417 4.0672 ( 1 95 120) 0 0.6955 0.8417 23 19 ( 4213 1nek_A) ( 3060 1ju2_A) 0.6472 0.5967 3.8263 ( 5 78 105) 0 0.6472 0.5967 23 25 ( 4213 1nek_A) ( 3113 1k0i_A) 0.6084 0.6360 4.1345 ( 2 66 91) 0 0.6084 0.6360 23 22 ( 4213 1nek_A) ( 3270 1kdg_A) 0.3764 0.3937 6.7184 ( 8 34 55) 0 0.5601 0.5985 23 20 ( 4213 1nek_A) ( 3702 1lqt_A) 0.2609 0.3158 6.7544 ( 0 11 15) 0 0.5052 0.5920 23 19 ( 4213 1nek_A) ( 3728 1ltx_R) 0.1739 0.1538 5.6944 ( 0 1 6) 0 0.4097 0.4038 23 26 ( 4213 1nek_A) ( 3751 1lvl ) 0.3478 0.8887 3.2246 ( 0 16 28) 0 0.3913 0.9983 23 9 ( 4213 1nek_A) ( 3859 1m6i_A) 0.2608 0.2998 9.5448 ( 1 14 15) 0 0.5609 0.6414 23 20 ( 4213 1nek_A) ( 3860 1m6i_A) 0.1739 0.2667 4.8819 ( 0 4 6) 0 0.5167 0.7612 23 15 ( 4213 1nek_A) ( 3989 1mo9_A) 0.5217 0.7055 4.3708 ( 1 41 66) 0 0.5217 0.7055 23 17 ( 4213 1nek_A) ( 3990 1mo9_A) 0.1724 0.3192 6.1372 ( 1 4 6) 0 0.4347 0.9072 23 11 ( 4213 1nek_A) ( 4127 1n4w_A) 0.6520 0.6520 3.8231 ( 2 80 105) 0 0.6520 0.6520 23 23 ( 4213 1nek_A) ( 4213 1nek_A) 1.0000 1.0000 0.0000 ( 0 223 253) 0 1.0000 1.0000 23 23 ( 4213 1nek_A) ( 4237 1ng4_A) 0.6813 0.7398 4.2718 ( 7 90 120) 0 0.6813 0.7398 23 21 ( 4213 1nek_A) ( 4257 1nhp ) 0.3912 0.8146 3.9465 ( 1 23 36) 0 0.4297 0.8146 23 11 ( 4213 1nek_A) ( 4258 1nhp ) 0.1739 0.3999 6.7982 ( 0 5 6) 0 0.4347 0.9978 23 10 ( 4213 1nek_A) ( 4559 1o94_A) 0.4318 0.7240 5.2482 ( 3 32 45) 0 0.4318 0.7240 23 13 ( 4213 1nek_A) ( 4680 1ojt ) 0.3928 0.4991 4.9580 ( 6 31 45) 0 0.4334 0.8009 23 12 ( 4213 1nek_A) ( 4728 1onf_A) 0.3913 0.8180 3.2616 ( 0 24 36) 0 0.3913 0.8180 23 11 ( 4213 1nek_A) ( 5024 1pj5_A) 0.6365 0.6903 4.3401 ( 7 81 105) 0 0.6365 0.6903 23 21 ( 4213 1nek_A) ( 5057 1pn0_A) 0.6519 0.6815 4.9588 ( 1 75 105) 0 0.6519 0.6815 23 22 ( 4213 1nek_A) ( 5095 1ps9_A) 0.1733 0.2785 10.2403 ( 1 5 6) 0 0.4779 0.7811 23 14 ( 4213 1nek_A) ( 5181 1q1r_A) 0.5196 0.6966 3.7483 ( 3 44 66) 0 0.5602 0.7429 23 17 ( 4213 1nek_A) ( 5182 1q1r_A) 0.1733 0.3419 5.7570 ( 1 5 6) 0 0.4782 0.9963 23 11 ( 4213 1nek_A) ( 5262 1q9i_A) 0.6520 0.5999 3.8474 ( 2 79 105) 0 0.7201 0.6840 23 25 ( 4213 1nek_A) ( 5370 1qla_A) 0.6956 0.7618 3.1093 ( 1 95 120) 0 0.6956 0.7618 23 21 ( 4213 1nek_A) ( 5760 1s3e_A) 0.4340 0.3700 4.7712 ( 2 30 45) 0 0.4340 0.3700 23 27 ( 4213 1nek_A) ( 5803 1sez_A) 0.2174 0.2083 3.1082 ( 0 5 10) 0 0.3241 0.3174 23 24 ( 4213 1nek_A) ( 5930 1trb ) 0.4715 0.7931 4.2789 ( 4 39 55) 0 0.4715 0.8333 23 12 ( 4213 1nek_A) ( 5931 1trb ) 0.1733 0.3417 10.1557 ( 1 5 6) 0 0.4749 0.9078 23 11 ( 4213 1nek_A) ( 6209 1vdc ) 0.1739 0.3635 8.2255 ( 0 4 6) 0 0.4574 0.9052 23 11 ( 4213 1nek_A) ( 6572 3grs ) 0.3911 0.8114 5.3984 ( 1 20 36) 0 0.3911 0.8114 23 11 ( 4213 1nek_A) ( 6573 3grs ) 0.1739 0.3636 5.8565 ( 0 1 6) 0 0.4143 0.6058 23 11 ( 4213 1nek_A) ( 6576 3lad_A) 0.5183 0.7727 5.4449 ( 3 39 66) 0 0.5183 0.7727 23 15 ( 4213 1nek_A) ( 6577 3lad_A) 0.1739 0.3636 5.6482 ( 0 1 6) 0 0.4782 0.9971 23 11 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