------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3990 1mo9_A) ( 281 1b37_A) 0.3636 0.1600 6.7020 ( 0 2 6) 0 0.8180 0.3600 11 25 ( 3990 1mo9_A) ( 594 1chu_A) 0.3635 0.2666 9.0706 ( 0 1 6) 0 0.9090 0.6666 11 15 ( 3990 1mo9_A) ( 756 1d5t_A) 0.8148 0.3599 3.0386 ( 1 23 36) 1 0.8148 0.3599 11 25 ( 3990 1mo9_A) ( 767 1d7y_A) 0.5284 0.3962 4.4584 ( 1 9 15) 0 0.8766 0.6593 11 15 ( 3990 1mo9_A) ( 1092 1ebd_A) 0.9091 0.9999 1.9506 ( 0 24 45) 0 0.9091 0.9999 11 10 ( 3990 1mo9_A) ( 1201 1el5_A) 0.3802 0.2336 8.1712 ( 2 9 10) 0 0.9089 0.4762 11 21 ( 3990 1mo9_A) ( 1439 1f8r_A) 0.3636 0.1379 7.4510 ( 0 2 6) 0 0.8181 0.3103 11 29 ( 3990 1mo9_A) ( 1465 1fcd_A) 0.4545 0.3333 4.5476 ( 0 4 10) 0 0.9088 0.6666 11 15 ( 3990 1mo9_A) ( 1466 1fcd_A) 0.8134 0.8924 3.0791 ( 1 21 36) 0 0.8134 0.8924 11 10 ( 3990 1mo9_A) ( 1478 1fec_A) 0.3631 0.2499 11.9941 ( 0 2 6) 0 0.9958 0.6868 11 16 ( 3990 1mo9_A) ( 1479 1fec_A) 0.9090 0.9090 2.4335 ( 0 24 45) 0 0.9090 0.9090 11 11 ( 3990 1mo9_A) ( 1544 1fl2_A) 0.4545 0.3333 5.0775 ( 0 2 10) 0 0.9089 0.6666 11 15 ( 3990 1mo9_A) ( 1545 1fl2_A) 0.9088 0.8332 3.1772 ( 0 24 45) 0 0.9088 0.8332 11 12 ( 3990 1mo9_A) ( 1896 1gpe_A) 0.3636 0.1739 7.5573 ( 0 1 6) 0 0.9935 0.4781 11 23 ( 3990 1mo9_A) ( 2112 1h6v_A) 0.4542 0.3333 8.1531 ( 0 6 10) 0 0.9954 0.7323 11 15 ( 3990 1mo9_A) ( 2113 1h6v_A) 0.9036 0.9036 2.2333 ( 1 23 45) 0 0.9036 0.9036 11 11 ( 3990 1mo9_A) ( 2128 1h7w_A) 0.9715 0.8334 3.6508 ( 2 34 55) 0 0.9737 0.8344 11 13 ( 3990 1mo9_A) ( 2837 1jeh_A) 0.9091 0.9999 2.0249 ( 0 24 45) 0 0.9091 0.9999 11 10 ( 3990 1mo9_A) ( 2994 1jnr_A) 0.4541 0.2631 8.8595 ( 0 6 10) 0 0.8149 0.4735 11 19 ( 3990 1mo9_A) ( 3060 1ju2_A) 0.8180 0.3600 3.3352 ( 0 19 36) 0 0.9088 0.4000 11 25 ( 3990 1mo9_A) ( 3113 1k0i_A) 0.3634 0.1818 10.1263 ( 0 3 6) 0 0.9765 0.4992 11 22 ( 3990 1mo9_A) ( 3270 1kdg_A) 0.3635 0.2000 8.4495 ( 0 0 6) 0 0.9675 0.5482 11 20 ( 3990 1mo9_A) ( 3702 1lqt_A) 0.9706 0.5769 4.6591 ( 2 34 55) 0 0.9706 0.5769 11 19 ( 3990 1mo9_A) ( 3728 1ltx_R) 0.3636 0.1538 4.5841 ( 0 1 6) 0 0.9069 0.3846 11 26 ( 3990 1mo9_A) ( 3751 1lvl ) 0.8182 0.9999 2.0605 ( 0 17 36) 0 0.8182 0.9999 11 9 ( 3990 1mo9_A) ( 3859 1m6i_A) 0.4545 0.2500 3.8782 ( 0 7 10) 0 0.7843 0.4902 11 20 ( 3990 1mo9_A) ( 3860 1m6i_A) 0.9065 0.6661 2.0978 ( 1 28 45) 0 0.9065 0.6661 11 15 ( 3990 1mo9_A) ( 3989 1mo9_A) 0.3636 0.2353 5.6704 ( 0 1 6) 0 0.9060 0.5879 11 17 ( 3990 1mo9_A) ( 3990 1mo9_A) 1.0000 1.0000 0.0000 ( 0 40 55) 0 1.0000 1.0000 11 11 ( 3990 1mo9_A) ( 4127 1n4w_A) 0.3635 0.1739 8.6113 ( 0 2 6) 0 0.8769 0.4735 11 23 ( 3990 1mo9_A) ( 4213 1nek_A) 0.3192 0.1724 6.1372 ( 1 4 6) 0 0.9072 0.4347 11 23 ( 3990 1mo9_A) ( 4237 1ng4_A) 0.7234 0.3808 3.1099 ( 1 19 28) 0 0.9089 0.4762 11 21 ( 3990 1mo9_A) ( 4257 1nhp ) 0.8142 0.8142 2.8529 ( 1 22 36) 0 0.8142 0.8142 11 11 ( 3990 1mo9_A) ( 4258 1nhp ) 0.8181 0.8999 2.2911 ( 0 22 36) 0 0.8181 0.8999 11 10 ( 3990 1mo9_A) ( 4559 1o94_A) 0.9060 0.7679 2.9559 ( 1 27 45) 0 0.9060 0.7679 11 13 ( 3990 1mo9_A) ( 4680 1ojt ) 0.8465 0.7908 2.6790 ( 2 24 45) 0 0.8465 0.7908 11 12 ( 3990 1mo9_A) ( 4728 1onf_A) 0.9090 0.9090 2.0596 ( 0 25 45) 0 0.9090 0.9090 11 11 ( 3990 1mo9_A) ( 5024 1pj5_A) 0.3636 0.1905 6.5319 ( 0 2 6) 0 0.9089 0.4762 11 21 ( 3990 1mo9_A) ( 5057 1pn0_A) 0.3636 0.1818 5.7323 ( 0 1 6) 0 0.5450 0.2843 11 22 ( 3990 1mo9_A) ( 5095 1ps9_A) 0.9275 0.7614 2.7920 ( 3 39 55) 0 0.9275 0.7614 11 14 ( 3990 1mo9_A) ( 5181 1q1r_A) 0.4545 0.2941 5.4696 ( 0 5 10) 0 0.9974 0.6468 11 17 ( 3990 1mo9_A) ( 5182 1q1r_A) 0.9140 0.9140 2.4823 ( 3 37 55) 0 0.9140 0.9140 11 11 ( 3990 1mo9_A) ( 5262 1q9i_A) 0.3636 0.1600 7.3240 ( 0 0 6) 0 0.9968 0.4399 11 25 ( 3990 1mo9_A) ( 5370 1qla_A) 0.3192 0.1881 6.3186 ( 1 4 6) 0 0.9072 0.4761 11 21 ( 3990 1mo9_A) ( 5760 1s3e_A) 0.4541 0.1852 8.7427 ( 0 7 10) 0 0.8181 0.3333 11 27 ( 3990 1mo9_A) ( 5803 1sez_A) 0.3636 0.1667 2.4805 ( 0 3 6) 0 0.3636 0.2225 11 24 ( 3990 1mo9_A) ( 5930 1trb ) 0.8180 0.7499 3.2566 ( 0 23 36) 0 0.8180 0.7499 11 12 ( 3990 1mo9_A) ( 5931 1trb ) 0.8181 0.8181 2.2712 ( 0 23 36) 0 0.8181 0.8181 11 11 ( 3990 1mo9_A) ( 6209 1vdc ) 0.9089 0.9089 3.0135 ( 0 24 45) 0 0.9089 0.9089 11 11 ( 3990 1mo9_A) ( 6572 3grs ) 0.7271 0.7271 3.7745 ( 0 16 28) 0 0.7271 0.7271 11 11 ( 3990 1mo9_A) ( 6573 3grs ) 0.9091 0.9091 1.4763 ( 0 24 45) 0 0.9091 0.9091 11 11 ( 3990 1mo9_A) ( 6576 3lad_A) 0.3635 0.2666 8.6735 ( 0 3 6) 0 0.8765 0.6970 11 15 ( 3990 1mo9_A) ( 6577 3lad_A) 0.9999 0.9999 1.8688 ( 0 34 55) 0 0.9999 0.9999 11 11 -------------------------------------------------------------------------------------------------------------------------