------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3060 1ju2_A) ( 281 1b37_A) 0.2400 0.2400 3.2060 ( 0 12 15) 0 0.3991 0.3991 25 25 ( 3060 1ju2_A) ( 594 1chu_A) 0.5189 0.8533 3.7499 ( 3 52 78) 0 0.5191 0.8552 25 15 ( 3060 1ju2_A) ( 756 1d5t_A) 0.4161 0.4161 5.5231 ( 8 41 66) 0 0.4825 0.4825 25 25 ( 3060 1ju2_A) ( 767 1d7y_A) 0.1600 0.2666 8.2759 ( 0 2 6) 0 0.4908 0.6972 25 15 ( 3060 1ju2_A) ( 1092 1ebd_A) 0.3599 0.8908 3.0327 ( 1 20 36) 0 0.3599 0.8908 25 10 ( 3060 1ju2_A) ( 1201 1el5_A) 0.4375 0.4608 4.9910 ( 12 59 91) 0 0.4465 0.4726 25 21 ( 3060 1ju2_A) ( 1439 1f8r_A) 0.2400 0.2069 3.1203 ( 0 12 15) 0 0.4489 0.4091 25 29 ( 3060 1ju2_A) ( 1465 1fcd_A) 0.4797 0.7957 3.0720 ( 2 42 66) 0 0.4841 0.7958 25 15 ( 3060 1ju2_A) ( 1466 1fcd_A) 0.3599 0.8925 2.6603 ( 1 21 36) 0 0.3962 0.8925 25 10 ( 3060 1ju2_A) ( 1478 1fec_A) 0.1600 0.2500 4.5681 ( 0 3 6) 0 0.3775 0.3957 25 16 ( 3060 1ju2_A) ( 1479 1fec_A) 0.1912 0.2870 13.7120 ( 2 6 10) 0 0.4364 0.8532 25 11 ( 3060 1ju2_A) ( 1544 1fl2_A) 0.2000 0.3333 7.4262 ( 0 7 10) 0 0.5178 0.8398 25 15 ( 3060 1ju2_A) ( 1545 1fl2_A) 0.2400 0.5000 2.4440 ( 0 10 15) 0 0.4315 0.8309 25 12 ( 3060 1ju2_A) ( 1896 1gpe_A) 0.4000 0.4348 2.8911 ( 1 39 45) 0 0.6900 0.7387 25 23 ( 3060 1ju2_A) ( 2112 1h6v_A) 0.4891 0.6509 4.6922 ( 6 43 78) 0 0.5052 0.7992 25 15 ( 3060 1ju2_A) ( 2113 1h6v_A) 0.3600 0.8181 2.8315 ( 0 18 36) 0 0.3600 0.8181 25 11 ( 3060 1ju2_A) ( 2128 1h7w_A) 0.2000 0.3845 7.5364 ( 0 5 10) 0 0.4258 0.7691 25 13 ( 3060 1ju2_A) ( 2837 1jeh_A) 0.3600 0.8999 2.7317 ( 0 21 36) 0 0.3999 0.9927 25 10 ( 3060 1ju2_A) ( 2994 1jnr_A) 0.5557 0.7206 4.5905 ( 5 67 91) 0 0.5557 0.7206 25 19 ( 3060 1ju2_A) ( 3060 1ju2_A) 1.0000 1.0000 0.0000 ( 0 259 300) 0 1.0000 1.0000 25 25 ( 3060 1ju2_A) ( 3113 1k0i_A) 0.5189 0.5888 5.3976 ( 3 53 78) 0 0.5189 0.5888 25 22 ( 3060 1ju2_A) ( 3270 1kdg_A) 0.7172 0.8915 2.4648 ( 6 122 153) 0 0.7172 0.8915 25 20 ( 3060 1ju2_A) ( 3702 1lqt_A) 0.2000 0.2631 8.7864 ( 0 6 10) 0 0.4689 0.5922 25 19 ( 3060 1ju2_A) ( 3728 1ltx_R) 0.4421 0.4351 4.8536 ( 13 65 91) 0 0.5118 0.4932 25 26 ( 3060 1ju2_A) ( 3751 1lvl ) 0.3198 0.8559 3.1214 ( 1 14 28) 0 0.3600 0.9988 25 9 ( 3060 1ju2_A) ( 3859 1m6i_A) 0.1600 0.2000 4.6918 ( 0 4 6) 0 0.3685 0.3981 25 20 ( 3060 1ju2_A) ( 3860 1m6i_A) 0.2000 0.3333 7.6987 ( 0 7 10) 0 0.4680 0.6883 25 15 ( 3060 1ju2_A) ( 3989 1mo9_A) 0.4574 0.5094 4.8036 ( 10 53 91) 0 0.4577 0.5094 25 17 ( 3060 1ju2_A) ( 3990 1mo9_A) 0.3199 0.7225 2.3838 ( 1 18 28) 0 0.4000 0.9088 25 11 ( 3060 1ju2_A) ( 4127 1n4w_A) 0.7127 0.7717 3.0927 ( 7 112 153) 0 0.7127 0.7717 25 23 ( 3060 1ju2_A) ( 4213 1nek_A) 0.5967 0.6472 3.8263 ( 5 78 105) 0 0.5967 0.6472 25 23 ( 3060 1ju2_A) ( 4237 1ng4_A) 0.3828 0.3941 5.1572 ( 14 57 91) 0 0.3828 0.3941 25 21 ( 3060 1ju2_A) ( 4257 1nhp ) 0.3599 0.8124 3.0425 ( 1 20 36) 0 0.3940 0.8124 25 11 ( 3060 1ju2_A) ( 4258 1nhp ) 0.3600 0.8997 3.2703 ( 0 20 36) 0 0.4000 0.9987 25 10 ( 3060 1ju2_A) ( 4559 1o94_A) 0.3975 0.7136 2.6008 ( 3 30 45) 0 0.4324 0.7136 25 13 ( 3060 1ju2_A) ( 4680 1ojt ) 0.2369 0.4204 3.3953 ( 2 10 15) 0 0.3540 0.6078 25 12 ( 3060 1ju2_A) ( 4728 1onf_A) 0.1795 0.2293 14.8492 ( 3 7 10) 0 0.3821 0.4657 25 11 ( 3060 1ju2_A) ( 5024 1pj5_A) 0.4974 0.5700 4.9050 ( 6 47 78) 0 0.4974 0.5706 25 21 ( 3060 1ju2_A) ( 5057 1pn0_A) 0.5020 0.5585 3.0402 ( 6 50 78) 0 0.5020 0.5585 25 22 ( 3060 1ju2_A) ( 5095 1ps9_A) 0.1912 0.2712 5.6321 ( 2 6 10) 0 0.4226 0.7136 25 14 ( 3060 1ju2_A) ( 5181 1q1r_A) 0.1600 0.2353 4.8470 ( 0 4 6) 0 0.5121 0.7170 25 17 ( 3060 1ju2_A) ( 5182 1q1r_A) 0.1950 0.3245 9.1863 ( 2 7 10) 0 0.4395 0.9713 25 11 ( 3060 1ju2_A) ( 5262 1q9i_A) 0.3787 0.3787 4.7889 ( 23 90 120) 0 0.5195 0.5195 25 25 ( 3060 1ju2_A) ( 5370 1qla_A) 0.5553 0.6556 3.1622 ( 5 65 91) 0 0.5553 0.6556 25 21 ( 3060 1ju2_A) ( 5760 1s3e_A) 0.3520 0.3434 5.0970 ( 12 46 66) 0 0.3520 0.3434 25 27 ( 3060 1ju2_A) ( 5803 1sez_A) 0.2399 0.2499 6.2051 ( 1 12 15) 0 0.3868 0.3961 25 24 ( 3060 1ju2_A) ( 5930 1trb ) 0.4400 0.9166 2.2078 ( 0 37 55) 0 0.4800 0.9989 25 12 ( 3060 1ju2_A) ( 5931 1trb ) 0.2400 0.5454 2.9425 ( 0 10 15) 0 0.4000 0.9061 25 11 ( 3060 1ju2_A) ( 6209 1vdc ) 0.1600 0.3635 8.7790 ( 0 4 6) 0 0.3999 0.9041 25 11 ( 3060 1ju2_A) ( 6572 3grs ) 0.3588 0.7559 4.9040 ( 2 21 36) 0 0.3940 0.7559 25 11 ( 3060 1ju2_A) ( 6573 3grs ) 0.3599 0.8142 2.9844 ( 1 22 36) 0 0.3599 0.8142 25 11 ( 3060 1ju2_A) ( 6576 3lad_A) 0.1600 0.2667 4.4086 ( 0 4 6) 0 0.2991 0.3332 25 15 ( 3060 1ju2_A) ( 6577 3lad_A) 0.1950 0.3245 9.6044 ( 2 7 10) 0 0.4400 0.9978 25 11 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