------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [5860, 68]: Comparing 1sur and 1a8h, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 35 (21 H + 14 S) secondary structure elements in 1a8h, of which 22 satisfy the size requirements. 3.20890 [ 3.92036] ((6 . 1) (8 . 3) (9 . 5) (11 . 7) (16 . 11) (17 . 12)) 9.728 {3/11:15} B:0 4.00005 [ 5.50002] ((5 . 19) (8 . 22) (9 . 24) (11 . 25)) 5.343 {0/5:6} B:0 4.00005 [ 5.50002] ((3 . 18) (6 . 20) (8 . 22) (11 . 24)) 5.478 {0/5:6} B:0 4.00007 [ 5.50003] ((4 . 20) (5 . 21) (6 . 22) (11 . 27)) 5.889 {0/3:6} B:0 4.00007 [ 5.50003] ((5 . 18) (6 . 20) (8 . 22) (11 . 24)) 5.897 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5618 [and 1/min{score2}: 0.4089] [5860, 646]: Comparing 1sur and 1coz_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1coz_A, of which 11 satisfy the size requirements. 2.66671 [ 1.83345] ((4 . 1) (5 . 2) (6 . 3) (7 . 5) (8 . 6) (13 . 11)) 3.736 {0/9:15} B:0 2.66698 [ 1.83429] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 10) (8 . 11)) 6.268 {0/9:15} B:0 2.68037 [ 1.87443] ((5 . 2) (6 . 3) (7 . 5) (8 . 6) (11 . 10) (13 . 11)) 7.470 {1/10:15} B:0 2.68134 [ 1.87726] ((3 . 5) (5 . 7) (6 . 8) (7 . 10) (8 . 11) (9 . 12)) 9.460 {1/10:15} B:0 3.20052 [ 2.20161] ((3 . 2) (4 . 3) (5 . 5) (6 . 6) (8 . 8)) 8.186 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.7270] [5860, 678]: Comparing 1sur and 1ct9_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 43 (26 H + 17 S) secondary structure elements in 1ct9_A, of which 22 satisfy the size requirements. 1.33904 [ 1.83554] ((3 . 21) (4 . 22) (5 . 23) (6 . 24) (7 . 25) (8 . 26) (9 . 27) (11 . 28) (13 . 29) (15 . 34) (16 . 38) (17 . 39)) 6.595 {2/50:66} B:0 1.45596 [ 2.00055] ((3 . 21) (4 . 22) (5 . 23) (6 . 24) (7 . 25) (8 . 26) (9 . 27) (12 . 28) (13 . 29) (15 . 34) (16 . 38)) 5.458 {1/40:55} B:0 3.21855 [ 4.40718] ((7 . 33) (8 . 34) (9 . 36) (11 . 38) (16 . 42)) 5.224 {1/8:10} B:0 3.23151 [ 4.41225] ((7 . 33) (8 . 34) (9 . 36) (12 . 38) (16 . 42)) 6.483 {1/7:10} B:0 4.00009 [ 5.50003] ((7 . 21) (12 . 25) (13 . 26) (17 . 30)) 6.244 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7468 [and 1/min{score2}: 0.5448] [5860, 875]: Comparing 1sur and 1dlj_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 30 (15 H + 15 S) secondary structure elements in 1dlj_A, of which 7 satisfy the size requirements. 2.68668 [ 1.35668] ((3 . 22) (4 . 23) (5 . 24) (6 . 25) (12 . 27) (13 . 28)) 5.178 {1/9:15} B:0 3.46388 [ 2.55996] ((3 . 22) (6 . 23) (7 . 24) (8 . 25) (12 . 29)) 7.284 {1/4:10} B:0 4.00003 [ 1.75039] ((4 . 25) (5 . 27) (6 . 28) (7 . 29)) 4.826 {0/1:6} B:0 4.00008 [ 1.75091] ((5 . 22) (6 . 23) (12 . 27) (13 . 28)) 5.976 {0/2:6} B:0 4.00022 [ 1.75265] ((3 . 22) (6 . 23) (7 . 24) (8 . 25)) 7.818 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3750 [and 1/min{score2}: 0.8565] [5860, 1135]: Comparing 1sur and 1efp_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 29 (14 H + 15 S) secondary structure elements in 1efp_A, of which 13 satisfy the size requirements. 3.12846 [ 3.08139] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (12 . 7) (13 . 8) (14 . 10) (15 . 15)) 3.650 {7/23:36} B:0 3.20007 [ 2.60013] ((3 . 7) (4 . 8) (5 . 9) (6 . 10) (8 . 15)) 4.986 {0/5:10} B:0 3.20018 [ 2.60034] ((3 . 4) (5 . 7) (6 . 8) (7 . 9) (8 . 10)) 6.294 {0/6:10} B:0 3.31576 [ 2.80282] ((6 . 1) (7 . 2) (8 . 3) (12 . 7) (13 . 8)) 5.662 {1/5:10} B:0 3.31716 [ 2.80514] ((3 . 7) (4 . 8) (5 . 9) (6 . 10) (13 . 17)) 10.966 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.5621 [and 1/min{score2}: 0.6913] [5860, 1139]: Comparing 1sur and 1efv_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 32 (14 H + 18 S) secondary structure elements in 1efv_A, of which 15 satisfy the size requirements. 2.66677 [ 2.50013] ((4 . 1) (5 . 4) (6 . 5) (7 . 6) (13 . 12) (15 . 16)) 4.793 {0/9:15} B:0 3.20006 [ 3.00007] ((3 . 9) (4 . 10) (5 . 11) (6 . 12) (8 . 16)) 4.674 {0/6:10} B:0 3.20009 [ 3.00011] ((4 . 1) (5 . 4) (6 . 5) (7 . 6) (12 . 11)) 5.253 {0/2:10} B:0 3.20013 [ 3.00016] ((6 . 1) (7 . 4) (8 . 5) (12 . 9) (15 . 12)) 5.820 {0/5:10} B:0 3.20013 [ 3.00016] ((6 . 1) (7 . 4) (8 . 5) (12 . 9) (13 . 10)) 5.831 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.5621 [and 1/min{score2}: 0.5994] [5860, 1140]: Comparing 1sur and 1efv_B, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 23 (9 H + 14 S) secondary structure elements in 1efv_B, of which 21 satisfy the size requirements. 3.20004 [ 4.20002] ((5 . 4) (7 . 6) (12 . 9) (13 . 10) (15 . 12)) 4.310 {0/5:10} B:0 3.20007 [ 4.20003] ((5 . 4) (6 . 5) (7 . 6) (8 . 7) (13 . 12)) 4.897 {0/5:10} B:0 3.20014 [ 4.20006] ((3 . 6) (5 . 9) (6 . 10) (7 . 11) (8 . 12)) 5.917 {0/6:10} B:0 3.20061 [ 4.20027] ((4 . 5) (5 . 6) (6 . 7) (8 . 10) (15 . 16)) 8.499 {0/6:10} B:0 3.23146 [ 4.21405] ((2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 12)) 6.016 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.6826 [and 1/min{score2}: 0.5225] [5860, 1429]: Comparing 1sur and 1f7u_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 48 (34 H + 14 S) secondary structure elements in 1f7u_A, of which 22 satisfy the size requirements. 3.20021 [ 4.40008] ((5 . 22) (6 . 23) (12 . 30) (13 . 31) (15 . 34)) 6.548 {0/6:10} B:0 3.25789 [ 4.42270] ((3 . 15) (4 . 16) (11 . 21) (12 . 22) (13 . 23)) 8.504 {1/6:10} B:0 4.00007 [ 5.50003] ((1 . 19) (2 . 21) (5 . 30) (8 . 34)) 5.871 {0/4:6} B:0 4.00023 [ 5.50009] ((4 . 14) (5 . 15) (6 . 16) (15 . 23)) 7.911 {0/3:6} B:0 4.00037 [ 5.50014] ((1 . 21) (2 . 22) (6 . 29) (11 . 33)) 8.856 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6816 [and 1/min{score2}: 0.4988] [5860, 1447]: Comparing 1sur and 1f9a_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1f9a_A, of which 12 satisfy the size requirements. 1.80769 [ 1.40075] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (12 . 6) (13 . 7) (15 . 9) (17 . 13)) 4.518 {2/22:36} B:0 2.00033 [ 1.50079] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (11 . 6) (13 . 7) (15 . 9)) 5.135 {0/19:28} B:0 2.28575 [ 1.71438] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 7) (15 . 9)) 3.321 {0/12:21} B:0 2.52096 [ 2.32958] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 7) (15 . 9) (17 . 10)) 3.694 {4/18:28} B:0 2.66923 [ 2.00605] ((3 . 4) (4 . 5) (6 . 7) (7 . 8) (8 . 9) (9 . 10)) 10.625 {0/10:15} B:0 SIMILARITY (1/min{score1}): 0.6244 [and 1/min{score2}: 0.8307] [5860, 1493]: Comparing 1sur and 1ffy_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 68 (40 H + 28 S) secondary structure elements in 1ffy_A, of which 21 satisfy the size requirements. 4.00027 [ 5.25012] ((4 . 24) (5 . 27) (9 . 32) (11 . 33)) 8.238 {0/4:6} B:0 4.00034 [ 5.25015] ((1 . 27) (7 . 37) (12 . 40) (13 . 41)) 8.688 {0/3:6} B:0 4.00037 [ 5.25016] ((4 . 24) (9 . 32) (11 . 33) (16 . 40)) 8.849 {0/6:6} B:0 4.00042 [ 5.25018] ((3 . 37) (8 . 41) (9 . 43) (11 . 44)) 9.141 {0/5:6} B:0 4.00043 [ 5.25019] ((3 . 40) (4 . 41) (7 . 44) (9 . 46)) 9.202 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.4371 [and 1/min{score2}: 0.3434] [5860, 1764]: Comparing 1sur and 1g8f_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 40 (22 H + 18 S) secondary structure elements in 1g8f_A, of which 14 satisfy the size requirements. 2.00030 [ 1.75045] ((4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (12 . 20) (13 . 21) (15 . 23)) 5.006 {0/17:28} B:0 3.20009 [ 2.80013] ((4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23)) 5.255 {0/5:10} B:0 3.20030 [ 2.80045] ((3 . 16) (4 . 17) (5 . 18) (8 . 21) (14 . 26)) 7.137 {0/9:10} B:0 3.20044 [ 2.80066] ((3 . 16) (4 . 17) (5 . 18) (7 . 20) (14 . 26)) 7.838 {0/8:10} B:0 3.20048 [ 2.80072] ((5 . 16) (6 . 17) (7 . 18) (8 . 19) (15 . 24)) 8.013 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5624 [and 1/min{score2}: 0.6427] [5860, 1902]: Comparing 1sur and 1gpm_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 38 (17 H + 21 S) secondary structure elements in 1gpm_A, of which 13 satisfy the size requirements. 1.33778 [ 1.09157] ((3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24) (12 . 25) (13 . 26) (15 . 28) (16 . 29) (17 . 30)) 4.565 {2/46:66} B:0 1.45493 [ 1.18253] ((3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24) (11 . 25) (13 . 26) (15 . 28) (16 . 29)) 4.196 {0/39:55} B:0 1.45496 [ 1.18259] ((3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24) (12 . 25) (13 . 26) (15 . 28) (16 . 29)) 4.269 {0/38:55} B:0 2.39400 [ 2.34659] ((3 . 18) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24) (12 . 25) (13 . 26) (15 . 28) (16 . 30)) 5.110 {9/39:55} B:0 2.66670 [ 2.16673] ((5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24) (13 . 28)) 3.599 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.7475 [and 1/min{score2}: 0.9161] [5860, 1949]: Comparing 1sur and 1gtr_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 47 (20 H + 27 S) secondary structure elements in 1gtr_A, of which 20 satisfy the size requirements. 2.64656 [ 2.82242] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 6) (12 . 16) (13 . 17) (15 . 20) (16 . 23)) 4.910 {6/24:36} B:0 3.25775 [ 4.03004] ((5 . 1) (6 . 2) (7 . 3) (8 . 4) (11 . 6)) 7.924 {1/6:10} B:0 4.00021 [ 5.00011] ((7 . 11) (12 . 16) (13 . 17) (15 . 20)) 7.679 {0/4:6} B:0 4.00027 [ 5.00014] ((7 . 1) (12 . 3) (13 . 4) (16 . 8)) 8.191 {0/5:6} B:0 4.00039 [ 5.00020] ((7 . 11) (8 . 12) (12 . 16) (15 . 20)) 9.012 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5517 [and 1/min{score2}: 0.4715] [5860, 2059]: Comparing 1sur and 1h3f_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 34 (21 H + 13 S) secondary structure elements in 1h3f_A, of which 23 satisfy the size requirements. 1.81001 [ 2.38145] ((3 . 1) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (12 . 13) (13 . 14) (15 . 16) (16 . 21)) 5.556 {4/28:45} B:0 2.00670 [ 2.64411] ((3 . 1) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (12 . 13) (13 . 14) (15 . 16)) 5.203 {3/19:36} B:0 2.01768 [ 2.64894] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (11 . 13) (13 . 16) (16 . 19)) 6.706 {4/25:36} B:0 3.20006 [ 4.60002] ((5 . 3) (6 . 4) (7 . 5) (8 . 6) (11 . 13)) 4.749 {0/4:10} B:0 3.20010 [ 4.60003] ((3 . 5) (5 . 7) (6 . 8) (13 . 14) (15 . 16)) 5.452 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5923 [and 1/min{score2}: 0.4289] [5860, 2067]: Comparing 1sur and 1h3n_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 71 (37 H + 34 S) secondary structure elements in 1h3n_A, of which 34 satisfy the size requirements. 3.31619 [ 6.81275] ((2 . 6) (6 . 11) (8 . 16) (9 . 17) (12 . 52)) 8.486 {1/5:10} B:0 3.63214 [ 5.82918] ((1 . 6) (6 . 11) (8 . 16) (9 . 17) (11 . 18) (12 . 47)) 5.750 {3/9:15} B:0 4.00005 [ 8.50000] ((1 . 6) (6 . 11) (8 . 16) (9 . 17)) 5.280 {0/3:6} B:0 4.00014 [ 8.50001] ((4 . 54) (5 . 56) (7 . 58) (8 . 59)) 7.004 {0/3:6} B:0 4.00014 [ 8.50002] ((6 . 2) (8 . 4) (11 . 6) (12 . 48)) 7.015 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4347 [and 1/min{score2}: 0.2263] [5860, 2413]: Comparing 1sur and 1i6l_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 21 (16 H + 5 S) secondary structure elements in 1i6l_A, of which 19 satisfy the size requirements. 1.77841 [ 2.11149] ((4 . 1) (5 . 3) (6 . 4) (7 . 6) (8 . 7) (12 . 12) (13 . 13) (15 . 15) (16 . 18)) 5.514 {0/24:36} B:0 3.12868 [ 3.20634] ((4 . 1) (5 . 3) (6 . 4) (7 . 6) (8 . 7) (11 . 9) (12 . 12) (13 . 13) (15 . 15)) 6.643 {7/23:36} B:0 3.20003 [ 3.80002] ((4 . 4) (7 . 6) (12 . 12) (13 . 13) (15 . 15)) 3.900 {0/7:10} B:0 3.20006 [ 3.80003] ((4 . 1) (5 . 2) (6 . 4) (7 . 6) (15 . 13)) 4.672 {0/5:10} B:0 3.20013 [ 3.80008] ((5 . 6) (6 . 7) (12 . 12) (13 . 13) (15 . 15)) 5.798 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7370 [and 1/min{score2}: 0.6260] [5860, 2527]: Comparing 1sur and 1ile, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 64 (37 H + 27 S) secondary structure elements in 1ile, of which 15 satisfy the size requirements. 3.20090 [ 3.00109] ((5 . 3) (8 . 4) (11 . 7) (12 . 8) (13 . 11)) 9.382 {0/4:10} B:0 4.00002 [ 3.75002] ((8 . 4) (9 . 5) (11 . 7) (12 . 8)) 4.275 {0/3:6} B:0 4.00033 [ 3.75041] ((3 . 3) (4 . 4) (5 . 5) (7 . 7)) 8.656 {0/3:6} B:0 4.00069 [ 3.75084] ((5 . 3) (6 . 4) (13 . 11) (16 . 16)) 10.382 {0/4:6} B:0 4.00074 [ 3.75090] ((5 . 3) (12 . 9) (13 . 11) (16 . 16)) 10.549 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3249 [and 1/min{score2}: 0.3363] [5860, 2558]: Comparing 1sur and 1iq0_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 42 (23 H + 19 S) secondary structure elements in 1iq0_A, of which 25 satisfy the size requirements. 4.00020 [ 6.25005] ((7 . 18) (12 . 22) (14 . 23) (15 . 24)) 7.595 {0/5:6} B:0 4.00047 [ 6.25012] ((3 . 17) (6 . 20) (13 . 26) (15 . 29)) 9.447 {0/3:6} B:0 4.00049 [ 6.25013] ((3 . 10) (4 . 11) (12 . 15) (13 . 16)) 9.504 {0/4:6} B:0 4.00057 [ 6.25015] ((8 . 16) (12 . 22) (14 . 23) (15 . 24)) 9.890 {0/5:6} B:0 4.00098 [ 6.25026] ((4 . 9) (5 . 10) (6 . 11) (16 . 18)) 11.311 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6861 [and 1/min{score2}: 0.4399] [5860, 2584]: Comparing 1sur and 1irx_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 37 (24 H + 13 S) secondary structure elements in 1irx_A, of which 20 satisfy the size requirements. 3.20040 [ 4.00021] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (11 . 7)) 7.673 {0/7:10} B:0 3.20045 [ 4.00023] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (13 . 8)) 7.867 {0/6:10} B:0 3.95524 [ 4.04529] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 7) (8 . 8) (12 . 18) (16 . 25)) 5.347 {7/18:28} B:0 4.00025 [ 5.00013] ((6 . 2) (7 . 3) (8 . 4) (16 . 11)) 8.069 {0/3:6} B:0 4.00035 [ 5.00018] ((12 . 1) (13 . 2) (15 . 4) (17 . 5)) 8.765 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.3705 [and 1/min{score2}: 0.2985] [5860, 2625]: Comparing 1sur and 1ivs_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 68 (34 H + 34 S) secondary structure elements in 1ivs_A, of which 25 satisfy the size requirements. 4.00004 [ 6.25001] ((5 . 42) (6 . 44) (8 . 47) (11 . 49)) 4.931 {0/4:6} B:0 4.00006 [ 6.25002] ((3 . 42) (6 . 44) (8 . 47) (11 . 49)) 5.613 {0/4:6} B:0 4.00044 [ 6.25012] ((6 . 2) (7 . 3) (8 . 4) (16 . 11)) 9.266 {0/3:6} B:0 4.00051 [ 6.25013] ((4 . 2) (7 . 3) (8 . 4) (16 . 11)) 9.635 {0/3:6} B:0 4.00055 [ 6.25014] ((2 . 1) (4 . 2) (5 . 3) (16 . 11)) 9.796 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6233 [and 1/min{score2}: 0.3998] [5860, 2682]: Comparing 1sur and 1j09_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 34 (25 H + 9 S) secondary structure elements in 1j09_A, of which 19 satisfy the size requirements. 2.28587 [ 2.71438] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (12 . 16) (13 . 17) (15 . 19)) 4.690 {0/10:21} B:0 3.61714 [ 3.69795] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (12 . 16) (13 . 17) (15 . 19) (16 . 21)) 5.403 {6/17:28} B:0 4.00005 [ 4.75003] ((3 . 16) (5 . 18) (6 . 19) (11 . 22)) 5.333 {0/5:6} B:0 4.00017 [ 4.75010] ((1 . 16) (3 . 18) (4 . 19) (7 . 21)) 7.291 {0/4:6} B:0 4.00038 [ 4.75023] ((8 . 1) (11 . 2) (13 . 3) (16 . 6)) 8.959 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5616 [and 1/min{score2}: 0.4733] [5860, 2702]: Comparing 1sur and 1j1u_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 23 (15 H + 8 S) secondary structure elements in 1j1u_A, of which 21 satisfy the size requirements. 3.20008 [ 4.20003] ((3 . 5) (6 . 9) (12 . 13) (13 . 14) (15 . 16)) 5.102 {0/5:10} B:0 3.23292 [ 4.21471] ((2 . 7) (3 . 8) (4 . 9) (7 . 13) (8 . 14)) 10.918 {1/7:10} B:0 4.00000 [ 5.25000] ((5 . 13) (6 . 14) (7 . 15) (8 . 16)) 2.867 {0/1:6} B:0 4.00004 [ 5.25002] ((3 . 5) (5 . 8) (6 . 9) (13 . 14)) 5.186 {0/4:6} B:0 4.00008 [ 5.25004] ((5 . 8) (6 . 9) (11 . 13) (13 . 14)) 6.127 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5618 [and 1/min{score2}: 0.4284] [5860, 2705]: Comparing 1sur and 1j20_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 30 (16 H + 14 S) secondary structure elements in 1j20_A, of which 12 satisfy the size requirements. 1.60110 [ 1.20260] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (9 . 7) (12 . 8) (13 . 9) (15 . 11) (16 . 13)) 4.398 {1/30:45} B:0 2.44857 [ 2.39471] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (9 . 6) (11 . 7) (12 . 8) (13 . 9) (15 . 11) (16 . 13)) 4.099 {9/38:55} B:0 2.74920 [ 2.69364] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (11 . 7) (12 . 8) (13 . 9) (15 . 11) (16 . 13)) 3.851 {8/30:45} B:0 3.20018 [ 2.40042] ((2 . 6) (3 . 8) (4 . 9) (5 . 10) (6 . 11)) 6.244 {0/7:10} B:0 3.20023 [ 2.40055] ((4 . 3) (5 . 4) (6 . 5) (9 . 7) (16 . 13)) 6.693 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6246 [and 1/min{score2}: 0.8315] [5860, 2864]: Comparing 1sur and 1jgt_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 44 (24 H + 20 S) secondary structure elements in 1jgt_A, of which 20 satisfy the size requirements. 3.20041 [ 4.00021] ((3 . 24) (4 . 25) (7 . 28) (12 . 32) (17 . 41)) 7.717 {0/5:10} B:0 3.20183 [ 4.00094] ((3 . 24) (4 . 25) (7 . 28) (9 . 30) (12 . 32)) 11.199 {0/7:10} B:0 4.00003 [ 5.00001] ((5 . 28) (6 . 29) (8 . 33) (16 . 42)) 4.676 {0/4:6} B:0 4.00004 [ 5.00002] ((7 . 32) (8 . 33) (9 . 35) (11 . 39)) 4.950 {0/4:6} B:0 4.00007 [ 5.00004] ((11 . 20) (13 . 21) (15 . 25) (16 . 26)) 5.932 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6385 [and 1/min{score2}: 0.5321] [5860, 2868]: Comparing 1sur and 1jhd_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 30 (15 H + 15 S) secondary structure elements in 1jhd_A, of which 14 satisfy the size requirements. 1.78148 [ 1.56106] ((4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (12 . 20) (13 . 21) (15 . 23) (17 . 30)) 4.564 {1/19:36} B:0 2.13873 [ 2.02423] ((4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (12 . 20) (13 . 21) (15 . 23) (17 . 29)) 4.463 {4/22:36} B:0 2.66670 [ 2.33339] ((4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (13 . 23)) 3.674 {0/8:15} B:0 3.20019 [ 2.80028] ((3 . 16) (4 . 17) (5 . 18) (6 . 19) (14 . 25)) 6.325 {0/7:10} B:0 3.20019 [ 2.80029] ((3 . 16) (4 . 17) (5 . 18) (8 . 19) (14 . 25)) 6.368 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6237 [and 1/min{score2}: 0.7118] [5860, 2894]: Comparing 1sur and 1jil_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 22 (17 H + 5 S) secondary structure elements in 1jil_A, of which 21 satisfy the size requirements. 1.61652 [ 2.10738] ((4 . 3) (5 . 4) (6 . 5) (7 . 7) (8 . 8) (11 . 12) (12 . 13) (13 . 14) (15 . 16) (16 . 21)) 5.558 {2/28:45} B:0 2.12771 [ 2.32662] ((3 . 1) (4 . 3) (5 . 4) (6 . 5) (7 . 7) (8 . 8) (11 . 12) (12 . 13) (13 . 14) (15 . 16) (16 . 21)) 5.947 {7/35:55} B:0 3.20004 [ 4.20002] ((4 . 5) (8 . 8) (12 . 13) (13 . 14) (15 . 16)) 4.434 {0/8:10} B:0 3.20006 [ 4.20003] ((4 . 5) (6 . 8) (12 . 13) (13 . 14) (15 . 16)) 4.731 {0/7:10} B:0 3.20013 [ 4.20006] ((5 . 7) (6 . 8) (12 . 13) (13 . 14) (15 . 16)) 5.795 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6186 [and 1/min{score2}: 0.4745] [5860, 2984]: Comparing 1sur and 1jmv_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 12 (6 H + 6 S) secondary structure elements in 1jmv_A, of which 10 satisfy the size requirements. 2.00631 [ 1.27521] ((4 . 1) (5 . 2) (6 . 3) (7 . 7) (8 . 8) (12 . 9) (13 . 10) (15 . 12)) 4.345 {1/15:28} B:0 3.20023 [ 2.00094] ((4 . 1) (5 . 2) (6 . 3) (7 . 6) (13 . 10)) 6.660 {0/4:10} B:0 3.31608 [ 2.37959] ((6 . 1) (7 . 2) (8 . 3) (12 . 7) (13 . 8)) 8.018 {1/5:10} B:0 4.00013 [ 2.50053] ((3 . 2) (4 . 3) (8 . 8) (11 . 11)) 6.814 {0/5:6} B:0 4.00016 [ 2.50065] ((3 . 2) (7 . 7) (12 . 11) (13 . 12)) 7.190 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.7992] [5860, 3174]: Comparing 1sur and 1k4k_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 17 (10 H + 7 S) secondary structure elements in 1k4k_A, of which 15 satisfy the size requirements. 2.66674 [ 2.50009] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 11)) 4.401 {0/9:15} B:0 3.20008 [ 3.00010] ((7 . 4) (8 . 5) (12 . 10) (13 . 11) (15 . 15)) 5.185 {0/7:10} B:0 3.20011 [ 3.00014] ((6 . 1) (7 . 2) (8 . 3) (12 . 7) (15 . 11)) 5.587 {0/5:10} B:0 3.20036 [ 3.00043] ((4 . 1) (7 . 2) (12 . 7) (13 . 8) (15 . 11)) 7.433 {0/5:10} B:0 3.20078 [ 3.00095] ((3 . 4) (5 . 7) (6 . 8) (8 . 11) (13 . 15)) 9.052 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5616 [and 1/min{score2}: 0.5988] [5860, 3225]: Comparing 1sur and 1k92_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 32 (16 H + 16 S) secondary structure elements in 1k92_A, of which 12 satisfy the size requirements. 3.20015 [ 2.40035] ((6 . 2) (7 . 3) (8 . 4) (12 . 10) (15 . 11)) 5.949 {0/5:10} B:0 4.00006 [ 3.00015] ((3 . 3) (5 . 5) (6 . 6) (12 . 12)) 5.689 {0/3:6} B:0 4.00006 [ 3.00015] ((4 . 4) (5 . 5) (6 . 6) (16 . 16)) 5.690 {0/3:6} B:0 4.00008 [ 3.00019] ((5 . 5) (6 . 6) (12 . 12) (13 . 13)) 6.030 {0/3:6} B:0 4.00022 [ 3.00053] ((2 . 7) (3 . 10) (4 . 11) (6 . 13)) 7.817 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6205 [and 1/min{score2}: 0.8152] [5860, 3241]: Comparing 1sur and 1kam_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 13 (7 H + 6 S) secondary structure elements in 1kam_A, of which 12 satisfy the size requirements. 2.28593 [ 1.71479] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 8) (15 . 11)) 5.071 {0/14:21} B:0 2.66676 [ 2.00022] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 10)) 4.659 {0/9:15} B:0 3.20005 [ 2.40012] ((4 . 1) (8 . 3) (12 . 7) (13 . 8) (15 . 10)) 4.575 {0/7:10} B:0 3.20048 [ 2.40113] ((3 . 2) (4 . 3) (5 . 4) (7 . 7) (8 . 8)) 7.997 {0/7:10} B:0 3.20052 [ 2.40122] ((3 . 2) (4 . 3) (5 . 4) (7 . 7) (11 . 9)) 8.162 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5618 [and 1/min{score2}: 0.7469] [5860, 3404]: Comparing 1sur and 1kqp_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 16 (12 H + 4 S) secondary structure elements in 1kqp_A, of which 15 satisfy the size requirements. 1.77841 [ 1.66743] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (12 . 9) (16 . 12)) 5.526 {0/23:36} B:0 2.00035 [ 1.87543] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (12 . 9) (16 . 12)) 5.210 {0/17:28} B:0 3.20013 [ 3.00015] ((3 . 2) (4 . 3) (5 . 4) (8 . 5) (12 . 9)) 5.735 {0/5:10} B:0 3.20043 [ 3.00052] ((3 . 2) (4 . 3) (7 . 4) (8 . 5) (12 . 9)) 7.796 {0/5:10} B:0 3.20054 [ 3.00065] ((11 . 1) (12 . 2) (13 . 3) (15 . 5) (17 . 8)) 8.251 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5623 [and 1/min{score2}: 0.5997] [5860, 3634]: Comparing 1sur and 1li5_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 29 (17 H + 12 S) secondary structure elements in 1li5_A, of which 21 satisfy the size requirements. 4.00019 [ 5.25008] ((4 . 3) (7 . 4) (8 . 5) (11 . 7)) 7.499 {0/3:6} B:0 4.00034 [ 5.25015] ((7 . 4) (8 . 5) (11 . 7) (15 . 11)) 8.715 {0/5:6} B:0 4.00045 [ 5.25020] ((6 . 3) (7 . 4) (8 . 5) (16 . 9)) 9.297 {0/3:6} B:0 4.00073 [ 5.25032] ((3 . 7) (12 . 15) (13 . 16) (15 . 19)) 10.526 {0/3:6} B:0 4.00831 [ 5.25368] ((2 . 7) (5 . 9) (14 . 19) (17 . 23)) 19.338 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6245 [and 1/min{score2}: 0.4761] [5860, 3755]: Comparing 1sur and 1lw7_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 25 (15 H + 10 S) secondary structure elements in 1lw7_A, of which 12 satisfy the size requirements. 1.96977 [ 1.69356] ((4 . 1) (5 . 2) (6 . 3) (7 . 5) (8 . 6) (12 . 7) (13 . 8) (15 . 10) (17 . 12)) 3.810 {3/20:36} B:0 3.20004 [ 2.40010] ((4 . 1) (5 . 2) (8 . 3) (12 . 7) (15 . 10)) 4.384 {0/7:10} B:0 4.00004 [ 3.00011] ((7 . 5) (8 . 6) (12 . 9) (13 . 10)) 5.231 {0/3:6} B:0 4.00005 [ 3.00013] ((6 . 1) (8 . 3) (12 . 7) (15 . 8)) 5.495 {0/4:6} B:0 4.00014 [ 3.00033] ((3 . 2) (7 . 5) (12 . 9) (13 . 10)) 6.939 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5623 [and 1/min{score2}: 0.7493] [5860, 3945]: Comparing 1sur and 1mjh_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1mjh_A, of which 9 satisfy the size requirements. 2.00018 [ 1.12603] ((4 . 1) (5 . 2) (6 . 3) (7 . 5) (8 . 6) (12 . 7) (13 . 8) (15 . 10)) 4.427 {0/14:28} B:0 2.66742 [ 1.50422] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10)) 7.827 {0/8:15} B:0 4.00019 [ 2.25104] ((3 . 2) (4 . 3) (7 . 5) (12 . 9)) 7.468 {0/3:6} B:0 4.00029 [ 2.25164] ((5 . 5) (6 . 6) (7 . 7) (8 . 8)) 8.368 {0/2:6} B:0 4.00046 [ 2.25257] ((5 . 5) (8 . 6) (11 . 9) (13 . 10)) 9.361 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.8881] [5860, 3995]: Comparing 1sur and 1mop_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 23 (13 H + 10 S) secondary structure elements in 1mop_A, of which 19 satisfy the size requirements. 2.00029 [ 2.37517] ((4 . 3) (5 . 4) (6 . 5) (7 . 8) (8 . 9) (12 . 14) (13 . 15) (15 . 17)) 4.962 {0/14:28} B:0 2.00681 [ 2.26012] ((4 . 3) (5 . 4) (6 . 5) (7 . 8) (8 . 9) (12 . 14) (13 . 15) (15 . 17) (17 . 18)) 5.576 {3/19:36} B:0 3.20005 [ 3.80003] ((3 . 4) (4 . 5) (5 . 8) (6 . 9) (13 . 15)) 4.503 {0/5:10} B:0 3.20018 [ 3.80011] ((3 . 4) (7 . 8) (12 . 14) (13 . 15) (15 . 17)) 6.250 {0/6:10} B:0 3.20039 [ 3.80023] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5)) 7.622 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.5827 [and 1/min{score2}: 0.5069] [5860, 4016]: Comparing 1sur and 1mrz_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 24 (11 H + 13 S) secondary structure elements in 1mrz_A, of which 12 satisfy the size requirements. 2.84293 [ 2.76553] ((4 . 1) (5 . 2) (6 . 3) (7 . 5) (8 . 6) (12 . 8) (13 . 9) (15 . 12) (17 . 15)) 5.021 {6/22:36} B:0 3.20005 [ 2.40011] ((4 . 1) (8 . 3) (12 . 8) (13 . 9) (15 . 12)) 4.503 {0/8:10} B:0 3.20006 [ 2.40015] ((6 . 1) (8 . 3) (12 . 8) (13 . 9) (15 . 12)) 4.835 {0/7:10} B:0 3.20029 [ 2.40069] ((3 . 5) (4 . 6) (6 . 9) (7 . 11) (8 . 12)) 7.064 {0/7:10} B:0 3.20046 [ 2.40110] ((3 . 2) (4 . 3) (5 . 5) (6 . 6) (11 . 11)) 7.947 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6242 [and 1/min{score2}: 0.8298] [5860, 4049]: Comparing 1sur and 1mv8_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 32 (19 H + 13 S) secondary structure elements in 1mv8_A, of which 12 satisfy the size requirements. 3.20017 [ 2.40041] ((4 . 22) (5 . 23) (6 . 24) (7 . 25) (13 . 31)) 6.201 {0/5:10} B:0 3.20018 [ 2.40042] ((3 . 21) (4 . 22) (5 . 23) (6 . 24) (13 . 31)) 6.245 {0/6:10} B:0 3.21851 [ 2.44307] ((2 . 27) (3 . 28) (4 . 29) (5 . 30) (6 . 32)) 4.307 {1/8:10} B:0 4.00004 [ 3.00010] ((7 . 23) (8 . 24) (13 . 29) (15 . 32)) 5.114 {0/3:6} B:0 4.00004 [ 3.00011] ((5 . 21) (11 . 26) (13 . 29) (15 . 31)) 5.237 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5460 [and 1/min{score2}: 0.6896] [5860, 4118]: Comparing 1sur and 1n3l_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 25 (17 H + 8 S) secondary structure elements in 1n3l_A, of which 23 satisfy the size requirements. 3.20008 [ 4.60003] ((4 . 6) (6 . 9) (12 . 13) (13 . 14) (15 . 16)) 5.171 {0/6:10} B:0 3.20012 [ 4.60004] ((3 . 5) (8 . 9) (12 . 13) (13 . 14) (15 . 16)) 5.630 {0/6:10} B:0 3.20611 [ 4.60206] ((5 . 13) (6 . 14) (8 . 16) (11 . 19) (16 . 24)) 15.148 {0/6:10} B:0 3.23277 [ 4.61116] ((2 . 7) (3 . 8) (4 . 9) (7 . 13) (8 . 14)) 10.659 {1/7:10} B:0 3.63214 [ 4.29218] ((5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (12 . 13)) 5.695 {1/3:15} B:0 SIMILARITY (1/min{score1}): 0.4994 [and 1/min{score2}: 0.3982] [5860, 4266]: Comparing 1sur and 1ni5_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 40 (20 H + 20 S) secondary structure elements in 1ni5_A, of which 16 satisfy the size requirements. 1.45477 [ 1.45477] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (12 . 7) (13 . 8) (14 . 11) (15 . 12) (16 . 14)) 3.656 {0/38:55} B:0 3.20039 [ 3.20039] ((4 . 2) (8 . 4) (12 . 7) (13 . 8) (16 . 10)) 7.614 {0/6:10} B:0 3.20040 [ 3.20040] ((6 . 2) (7 . 3) (8 . 4) (12 . 7) (16 . 10)) 7.635 {0/5:10} B:0 4.00015 [ 4.00015] ((4 . 4) (5 . 5) (6 . 6) (8 . 8)) 7.121 {0/3:6} B:0 4.00028 [ 4.00028] ((4 . 4) (5 . 5) (6 . 6) (16 . 16)) 8.276 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6874 [and 1/min{score2}: 0.6874] [5860, 4399]: Comparing 1sur and 1nup_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 16 (10 H + 6 S) secondary structure elements in 1nup_A, of which 15 satisfy the size requirements. 2.66678 [ 2.50013] ((4 . 1) (6 . 3) (7 . 4) (8 . 5) (13 . 8) (15 . 11)) 4.836 {0/10:15} B:0 3.20006 [ 3.00008] ((4 . 3) (7 . 4) (8 . 5) (13 . 11) (15 . 14)) 4.834 {0/7:10} B:0 3.20011 [ 3.00013] ((4 . 1) (8 . 3) (12 . 7) (13 . 8) (15 . 11)) 5.534 {0/8:10} B:0 3.20033 [ 3.00040] ((3 . 4) (5 . 7) (6 . 8) (8 . 11) (11 . 12)) 7.316 {0/8:10} B:0 3.20053 [ 3.00065] ((6 . 1) (8 . 3) (11 . 4) (12 . 7) (15 . 8)) 8.234 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5613 [and 1/min{score2}: 0.5984] [5860, 4455]: Comparing 1sur and 1nzj_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 23 (13 H + 10 S) secondary structure elements in 1nzj_A, of which 18 satisfy the size requirements. 3.43650 [ 3.49434] ((4 . 1) (5 . 2) (6 . 3) (7 . 5) (12 . 16) (13 . 17) (15 . 19) (16 . 20)) 4.910 {6/18:28} B:0 4.00007 [ 4.50005] ((5 . 16) (6 . 17) (8 . 19) (11 . 22)) 5.817 {0/4:6} B:0 4.00012 [ 4.50009] ((3 . 2) (4 . 3) (5 . 5) (9 . 10)) 6.717 {0/5:6} B:0 4.00021 [ 4.50015] ((3 . 5) (12 . 16) (13 . 17) (15 . 19)) 7.735 {0/3:6} B:0 4.00039 [ 4.50027] ((3 . 16) (4 . 17) (5 . 18) (7 . 20)) 8.978 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5618 [and 1/min{score2}: 0.4996] [5860, 4560]: Comparing 1sur and 1o97_C, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 24 (11 H + 13 S) secondary structure elements in 1o97_C, of which 18 satisfy the size requirements. 3.20004 [ 3.60003] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (15 . 17)) 4.198 {0/5:10} B:0 3.20007 [ 3.60005] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (15 . 14)) 4.933 {0/5:10} B:0 3.20107 [ 3.60075] ((4 . 2) (5 . 5) (6 . 6) (7 . 7) (8 . 8)) 9.789 {0/4:10} B:0 3.23440 [ 3.27793] ((4 . 1) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (12 . 10) (13 . 11) (14 . 13) (15 . 17)) 4.118 {6/19:36} B:0 4.00004 [ 4.50002] ((4 . 1) (7 . 5) (8 . 6) (12 . 10)) 4.942 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5622 [and 1/min{score2}: 0.4998] [5860, 4561]: Comparing 1sur and 1o97_D, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 30 (12 H + 18 S) secondary structure elements in 1o97_D, of which 15 satisfy the size requirements. 2.66706 [ 2.50047] ((3 . 6) (4 . 7) (5 . 8) (6 . 9) (7 . 11) (8 . 12)) 6.640 {0/9:15} B:0 2.66729 [ 2.50076] ((3 . 6) (5 . 8) (6 . 9) (7 . 11) (8 . 12) (13 . 17)) 7.476 {0/10:15} B:0 2.66731 [ 2.50078] ((3 . 6) (5 . 8) (6 . 9) (7 . 11) (8 . 12) (13 . 16)) 7.530 {0/7:15} B:0 3.20005 [ 3.00006] ((4 . 1) (5 . 4) (6 . 5) (8 . 7) (13 . 12)) 4.513 {0/6:10} B:0 3.20013 [ 3.00016] ((4 . 1) (5 . 4) (6 . 5) (8 . 7) (15 . 14)) 5.791 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5622 [and 1/min{score2}: 0.5996] [5860, 4602]: Comparing 1sur and 1od6_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1od6_A, of which 11 satisfy the size requirements. 1.78023 [ 1.22972] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (12 . 6) (13 . 7) (15 . 9) (17 . 12)) 3.992 {1/21:36} B:0 2.00011 [ 1.37535] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (12 . 6) (13 . 7) (15 . 9)) 3.931 {0/17:28} B:0 2.00385 [ 1.38674] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 7) (15 . 9) (17 . 12)) 4.015 {1/17:28} B:0 2.38448 [ 2.22640] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (12 . 6) (13 . 7) (15 . 9) (17 . 11)) 4.175 {5/23:36} B:0 3.20002 [ 2.20007] ((4 . 1) (5 . 2) (6 . 3) (8 . 5) (13 . 9)) 3.675 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.5621 [and 1/min{score2}: 0.8159] [5860, 4998]: Comparing 1sur and 1pfv_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 38 (22 H + 16 S) secondary structure elements in 1pfv_A, of which 23 satisfy the size requirements. 4.00011 [ 5.75004] ((5 . 21) (6 . 23) (8 . 25) (11 . 27)) 6.514 {0/4:6} B:0 4.00012 [ 5.75004] ((4 . 3) (8 . 6) (9 . 7) (12 . 21)) 6.707 {0/5:6} B:0 4.00022 [ 5.75008] ((4 . 1) (7 . 2) (8 . 3) (11 . 5)) 7.837 {0/3:6} B:0 4.00036 [ 5.75012] ((4 . 1) (5 . 2) (11 . 5) (13 . 6)) 8.830 {0/4:6} B:0 4.00054 [ 5.75018] ((6 . 1) (7 . 2) (8 . 3) (16 . 7)) 9.740 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6683 [and 1/min{score2}: 0.4750] [5860, 5174]: Comparing 1sur and 1q15_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 41 (22 H + 19 S) secondary structure elements in 1q15_A, of which 18 satisfy the size requirements. 1.60050 [ 1.80035] ((3 . 20) (4 . 21) (5 . 22) (6 . 23) (7 . 24) (8 . 25) (12 . 27) (13 . 28) (15 . 32) (16 . 37)) 4.816 {0/29:45} B:0 3.20012 [ 3.60008] ((5 . 20) (6 . 21) (7 . 22) (8 . 23) (12 . 27)) 5.665 {0/2:10} B:0 3.20071 [ 3.60050] ((3 . 24) (4 . 25) (8 . 28) (11 . 30) (12 . 31)) 8.845 {0/7:10} B:0 3.21880 [ 3.61325] ((3 . 24) (4 . 25) (7 . 27) (8 . 28) (11 . 30)) 7.362 {1/8:10} B:0 3.23204 [ 3.62263] ((1 . 20) (3 . 24) (4 . 25) (7 . 27) (17 . 39)) 8.966 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.6430 [and 1/min{score2}: 0.5849] [5860, 5226]: Comparing 1sur and 1q77_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1q77_A, of which 10 satisfy the size requirements. 2.07244 [ 1.48695] ((4 . 1) (5 . 2) (6 . 3) (7 . 5) (8 . 6) (12 . 7) (13 . 8) (15 . 10)) 4.422 {2/16:28} B:0 3.20013 [ 2.00055] ((7 . 2) (8 . 3) (9 . 4) (12 . 7) (15 . 10)) 5.822 {0/7:10} B:0 3.20014 [ 2.00057] ((4 . 1) (7 . 2) (8 . 3) (9 . 4) (12 . 7)) 5.870 {0/4:10} B:0 3.20033 [ 2.00134] ((3 . 5) (5 . 7) (6 . 8) (7 . 9) (8 . 10)) 7.284 {0/5:10} B:0 3.20050 [ 2.00206] ((6 . 1) (7 . 2) (8 . 3) (9 . 4) (13 . 6)) 8.114 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5514 [and 1/min{score2}: 0.8073] [5860, 5579]: Comparing 1sur and 1r6t_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 33 (22 H + 11 S) secondary structure elements in 1r6t_A, of which 25 satisfy the size requirements. 3.20013 [ 5.00004] ((3 . 12) (5 . 15) (6 . 16) (13 . 23) (15 . 25)) 5.833 {0/6:10} B:0 3.20070 [ 5.00018] ((1 . 8) (4 . 13) (7 . 15) (12 . 20) (15 . 23)) 8.796 {0/7:10} B:0 3.23166 [ 5.00840] ((4 . 11) (6 . 23) (7 . 24) (8 . 25) (16 . 33)) 7.435 {1/7:10} B:0 4.00004 [ 6.25001] ((4 . 11) (5 . 12) (7 . 15) (15 . 23)) 5.028 {0/3:6} B:0 4.00004 [ 6.25001] ((5 . 12) (7 . 15) (8 . 16) (15 . 23)) 5.128 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5615 [and 1/min{score2}: 0.4450] [5860, 5707]: Comparing 1sur and 1ru8_A, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1ru8_A, of which 16 satisfy the size requirements. 1.77889 [ 1.77889] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (12 . 6) (13 . 7) (15 . 9) (16 . 10)) 3.773 {1/26:36} B:0 2.28578 [ 2.28578] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5) (13 . 9) (16 . 10)) 3.796 {0/15:21} B:0 3.20007 [ 3.20007] ((6 . 1) (8 . 3) (12 . 6) (13 . 7) (16 . 10)) 4.988 {0/9:10} B:0 3.20017 [ 3.20017] ((6 . 1) (7 . 2) (8 . 3) (12 . 6) (16 . 10)) 6.155 {0/6:10} B:0 3.20061 [ 3.20061] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 7)) 8.515 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5621 [and 1/min{score2}: 0.5621] [5860, 5860]: Comparing 1sur and 1sur, based on their crossing files. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. There are 17 (11 H + 6 S) secondary structure elements in 1sur, of which 16 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17)) 0.000 {0/101:120} B:0 1.06667 [ 1.06667] ((2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17)) 0.000 {0/89:105} B:0 4.00029 [ 4.00029] ((6 . 4) (7 . 5) (11 . 7) (15 . 13)) 8.330 {0/4:6} B:0 4.00029 [ 4.00029] ((4 . 6) (5 . 7) (7 . 11) (13 . 15)) 8.330 {0/4:6} B:0 4.00090 [ 4.00090] ((9 . 2) (11 . 3) (12 . 5) (15 . 8)) 11.093 {0/4:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] -------------------------------------------------------------------------------------------------------------------------