------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 506 1c1d_A) ( 42 1a4i_A) 0.5831 0.6994 5.5510 ( 0 7 21) 0 0.5832 0.6996 12 10 ( 506 1c1d_A) ( 265 1b16_A) 0.4999 0.3750 5.5764 ( 0 0 15) 0 0.7486 0.5622 12 16 ( 506 1c1d_A) ( 312 1b7g_O) 0.4996 0.4613 7.5730 ( 0 4 15) 0 0.7489 0.6915 12 13 ( 506 1c1d_A) ( 319 1b8p_A) 0.5832 0.6361 5.0447 ( 0 2 21) 0 0.6660 0.7262 12 11 ( 506 1c1d_A) ( 352 1bdb ) 0.4998 0.3333 6.7667 ( 0 1 15) 0 0.7479 0.4997 12 18 ( 506 1c1d_A) ( 377 1bg6 ) 0.5000 0.3333 2.4930 ( 0 7 15) 0 0.6633 0.4440 12 18 ( 506 1c1d_A) ( 506 1c1d_A) 1.0000 1.0000 0.0000 ( 0 45 66) 0 1.0000 1.0000 12 12 ( 506 1c1d_A) ( 707 1cyd_A) 0.4998 0.3333 6.3072 ( 0 1 15) 0 0.7485 0.4998 12 18 ( 506 1c1d_A) ( 781 1db3_A) 0.4998 0.2727 6.1729 ( 0 6 15) 0 0.6659 0.3802 12 22 ( 506 1c1d_A) ( 847 1dih ) 0.4167 0.7142 3.6473 ( 0 0 10) 0 0.5000 0.8567 12 7 ( 506 1c1d_A) ( 873 1dlj_A) 0.5000 0.3750 4.5144 ( 0 7 15) 0 0.6653 0.4997 12 16 ( 506 1c1d_A) ( 906 1dpg_A) 0.5828 0.5381 6.6224 ( 0 9 21) 0 0.6663 0.6152 12 13 ( 506 1c1d_A) ( 972 1dxy ) 0.6661 0.5383 4.1808 ( 2 17 36) 0 0.7356 0.5590 12 16 ( 506 1c1d_A) ( 1053 1e6u_A) 0.4997 0.2727 7.1511 ( 0 7 15) 0 0.6656 0.3636 12 22 ( 506 1c1d_A) ( 1071 1e7w_A) 0.4166 0.2941 5.1589 ( 0 2 10) 0 0.7485 0.5635 12 17 ( 506 1c1d_A) ( 1094 1ebf_A) 0.3429 0.3429 9.2830 ( 1 4 10) 0 0.6653 0.6653 12 12 ( 506 1c1d_A) ( 1117 1edz_A) 0.6149 0.6149 5.8625 ( 2 17 28) 0 0.6149 0.6149 12 12 ( 506 1c1d_A) ( 1189 1ek6_A) 0.4999 0.2727 5.7553 ( 0 1 15) 0 0.7482 0.4090 12 22 ( 506 1c1d_A) ( 1219 1enp ) 0.4166 0.2778 5.5033 ( 0 2 10) 0 0.7479 0.5394 12 18 ( 506 1c1d_A) ( 1221 1eny ) 0.4166 0.2941 5.7103 ( 0 1 10) 0 0.7480 0.5291 12 17 ( 506 1c1d_A) ( 1242 1eq2_A) 0.5479 0.3162 5.7041 ( 1 8 21) 0 0.7622 0.4503 12 22 ( 506 1c1d_A) ( 1355 1f14_A) 0.4166 0.3333 6.0551 ( 0 1 10) 0 0.5830 0.4666 12 15 ( 506 1c1d_A) ( 1436 1f8f_A) 0.4998 0.4285 5.9931 ( 0 4 15) 0 0.8138 0.7050 12 14 ( 506 1c1d_A) ( 1487 1ff9_A) 0.4166 0.3333 4.4222 ( 0 2 10) 0 0.6657 0.5498 12 15 ( 506 1c1d_A) ( 1531 1fjh_A) 0.4166 0.3125 5.7898 ( 0 1 10) 0 0.7436 0.5609 12 16 ( 506 1c1d_A) ( 1560 1fmc_A) 0.4999 0.3529 5.8059 ( 0 1 15) 0 0.7485 0.5678 12 17 ( 506 1c1d_A) ( 1804 1gdh_A) 0.7238 0.6303 2.3330 ( 1 12 36) 0 0.7238 0.6303 12 14 ( 506 1c1d_A) ( 1807 1gee_A) 0.4999 0.3000 5.9061 ( 0 1 15) 0 0.7485 0.4667 12 20 ( 506 1c1d_A) ( 1809 1geg_A) 0.4999 0.3529 5.6973 ( 0 1 15) 0 0.8171 0.5853 12 17 ( 506 1c1d_A) ( 1899 1gpj_A) 0.6908 0.6908 3.7087 ( 2 19 36) 0 0.7457 0.7457 12 12 ( 506 1c1d_A) ( 1922 1gr0_A) 0.5530 0.5080 6.6226 ( 2 13 28) 0 0.6661 0.5886 12 14 ( 506 1c1d_A) ( 1948 1gtm_A) 0.7842 0.6471 2.4438 ( 4 38 55) 0 0.7842 0.6471 12 16 ( 506 1c1d_A) ( 1956 1gu7_A) 0.4998 0.3529 6.7139 ( 0 8 15) 0 0.6070 0.4989 12 17 ( 506 1c1d_A) ( 2004 1gy8_A) 0.4166 0.2174 6.5096 ( 0 0 10) 0 0.7343 0.3907 12 23 ( 506 1c1d_A) ( 2016 1gz3_A) 0.7381 0.5273 5.2264 ( 1 15 36) 0 0.8266 0.5870 12 17 ( 506 1c1d_A) ( 2017 1gz6_A) 0.4167 0.2500 4.1965 ( 0 2 10) 0 0.7482 0.4499 12 20 ( 506 1c1d_A) ( 2046 1h2b_A) 0.4999 0.4285 5.2147 ( 0 3 15) 0 0.7488 0.6437 12 14 ( 506 1c1d_A) ( 2090 1h5q_A) 0.4998 0.3000 6.4238 ( 0 2 15) 0 0.7485 0.4604 12 20 ( 506 1c1d_A) ( 2095 1h6d_A) 0.5833 0.5000 3.8879 ( 0 6 21) 0 0.7338 0.6352 12 14 ( 506 1c1d_A) ( 2180 1hdc_A) 0.4998 0.3529 6.1414 ( 0 2 15) 0 0.7481 0.5291 12 17 ( 506 1c1d_A) ( 2189 1hdo_A) 0.4166 0.3333 5.0459 ( 0 2 10) 0 0.6663 0.5332 12 15 ( 506 1c1d_A) ( 2194 1het_A) 0.4998 0.3999 6.0852 ( 0 4 15) 0 0.7384 0.5961 12 15 ( 506 1c1d_A) ( 2270 1hrd_A) 0.8955 0.6823 3.9219 ( 2 33 55) 0 0.8955 0.6823 12 16 ( 506 1c1d_A) ( 2309 1hwx_A) 0.8119 0.5843 3.1533 ( 2 29 45) 0 0.8119 0.5843 12 17 ( 506 1c1d_A) ( 2316 1hxh_A) 0.4998 0.3750 6.1918 ( 0 1 15) 0 0.7484 0.5621 12 16 ( 506 1c1d_A) ( 2328 1hye_A) 0.5831 0.6361 5.2400 ( 0 2 21) 0 0.6452 0.6951 12 11 ( 506 1c1d_A) ( 2330 1hyh_A) 0.5830 0.6359 5.9460 ( 0 8 21) 0 0.6365 0.6827 12 11 ( 506 1c1d_A) ( 2368 1i24_A) 0.4998 0.2222 6.5132 ( 0 2 15) 0 0.8270 0.3703 12 27 ( 506 1c1d_A) ( 2376 1i36_A) 0.4999 0.4000 5.2451 ( 0 1 15) 0 0.8244 0.6637 12 15 ( 506 1c1d_A) ( 2463 1id1_A) 0.5833 0.5384 3.8421 ( 0 8 21) 0 0.6661 0.6150 12 13 ( 506 1c1d_A) ( 2615 1iuk_A) 0.5000 0.5000 2.1831 ( 0 1 15) 0 0.5833 0.5833 12 12 ( 506 1c1d_A) ( 2657 1iy8_A) 0.4998 0.3529 6.1912 ( 0 1 15) 0 0.7493 0.5293 12 17 ( 506 1c1d_A) ( 2674 1iz0_A) 0.5892 0.5456 4.4763 ( 3 19 45) 0 0.6664 0.5456 12 15 ( 506 1c1d_A) ( 2725 1j3v_A) 0.4166 0.3571 5.7997 ( 0 0 10) 0 0.6991 0.6174 12 14 ( 506 1c1d_A) ( 2736 1j5p_A) 0.5000 0.5999 3.6691 ( 0 1 15) 0 0.5833 0.6999 12 10 ( 506 1c1d_A) ( 2781 1ja9_A) 0.4166 0.2941 5.3584 ( 0 0 10) 0 0.7481 0.5291 12 17 ( 506 1c1d_A) ( 2789 1jax_A) 0.5533 0.3868 4.4964 ( 2 13 28) 0 0.6623 0.4201 12 20 ( 506 1c1d_A) ( 3017 1jqb_A) 0.6041 0.5098 4.4841 ( 1 8 28) 0 0.6662 0.5332 12 15 ( 506 1c1d_A) ( 3059 1jtv_A) 0.5529 0.4229 6.9645 ( 2 13 28) 0 0.7474 0.4997 12 18 ( 506 1c1d_A) ( 3072 1jvb_A) 0.5833 0.5385 2.5971 ( 0 7 21) 0 0.6664 0.6152 12 13 ( 506 1c1d_A) ( 3144 1k2w_A) 0.4998 0.3529 6.3948 ( 0 2 15) 0 0.7484 0.5291 12 17 ( 506 1c1d_A) ( 3192 1k6j_A) 0.4999 0.2500 4.9419 ( 0 2 15) 0 0.7540 0.4135 12 24 ( 506 1c1d_A) ( 3257 1kbz_A) 0.4166 0.2631 6.6271 ( 0 4 10) 0 0.7297 0.4715 12 19 ( 506 1c1d_A) ( 3385 1kol_A) 0.6041 0.4825 3.7837 ( 1 8 28) 0 0.7215 0.5553 12 16 ( 506 1c1d_A) ( 3414 1ks9_A) 0.4999 0.3529 5.1876 ( 0 6 15) 0 0.4999 0.3529 12 17 ( 506 1c1d_A) ( 3481 1kyq_A) 0.5000 0.6000 3.4925 ( 0 1 15) 0 0.5000 0.6000 12 10 ( 506 1c1d_A) ( 3561 1l7d_A) 0.7000 0.5819 4.1300 ( 2 20 36) 0 0.7000 0.5819 12 15 ( 506 1c1d_A) ( 3593 1lc0_A) 0.4165 0.4165 7.3721 ( 0 2 10) 0 0.6659 0.6659 12 12 ( 506 1c1d_A) ( 3606 1ldn_A) 0.6553 0.6553 5.1904 ( 1 13 28) 0 0.6553 0.6553 12 12 ( 506 1c1d_A) ( 3610 1leh_A) 0.9559 0.8926 1.6535 ( 3 45 66) 0 0.9559 0.8926 12 13 ( 506 1c1d_A) ( 3633 1li4_A) 0.6373 0.5951 2.4874 ( 1 10 28) 0 0.6664 0.6152 12 13 ( 506 1c1d_A) ( 3637 1lj8_A) 0.4203 0.2910 7.3434 ( 1 5 15) 0 0.5831 0.3500 12 20 ( 506 1c1d_A) ( 3677 1lnq_A) 0.5833 0.3889 3.9595 ( 0 8 21) 0 0.6491 0.4824 12 18 ( 506 1c1d_A) ( 3722 1lss_A) 0.6240 0.6240 4.9788 ( 1 9 28) 0 0.6657 0.6657 12 12 ( 506 1c1d_A) ( 3724 1lsu_A) 0.6041 0.6041 4.3973 ( 1 8 28) 0 0.6363 0.6363 12 12 ( 506 1c1d_A) ( 3734 1lu9_A) 0.5505 0.5209 4.9444 ( 3 18 36) 0 0.7505 0.6714 12 14 ( 506 1c1d_A) ( 3854 1m66_A) 0.5833 0.4375 3.3604 ( 0 6 21) 0 0.6658 0.4998 12 16 ( 506 1c1d_A) ( 4047 1mv8_A) 0.5722 0.4097 5.2534 ( 1 11 21) 0 0.6989 0.5192 12 17 ( 506 1c1d_A) ( 4067 1mx3_A) 0.6667 0.5714 2.0764 ( 0 8 28) 0 0.6667 0.5714 12 14 ( 506 1c1d_A) ( 4131 1n5d_A) 0.4166 0.2941 5.8203 ( 0 2 10) 0 0.6665 0.4706 12 17 ( 506 1c1d_A) ( 4341 1np3_A) 0.5832 0.4117 4.7841 ( 0 8 21) 0 0.6658 0.4704 12 17 ( 506 1c1d_A) ( 4351 1npy_A) 0.6306 0.6039 3.9060 ( 2 15 36) 0 0.6997 0.6571 12 13 ( 506 1c1d_A) ( 4404 1nvm_B) 0.4166 0.4166 6.1264 ( 0 3 10) 0 0.7489 0.7489 12 12 ( 506 1c1d_A) ( 4409 1nvt_A) 0.4999 0.4999 5.6812 ( 0 4 15) 0 0.6662 0.6662 12 12 ( 506 1c1d_A) ( 4417 1nwc_A) 0.4166 0.4544 6.2987 ( 0 3 10) 0 0.6660 0.7262 12 11 ( 506 1c1d_A) ( 4430 1nxq_A) 0.8175 0.5534 7.3743 ( 1 17 45) 0 0.8234 0.5542 12 18 ( 506 1c1d_A) ( 4447 1nyt_A) 0.6796 0.6422 3.9288 ( 2 18 36) 0 0.7822 0.7335 12 13 ( 506 1c1d_A) ( 4499 1o5i_A) 0.4997 0.3529 7.2127 ( 0 0 15) 0 0.8054 0.5830 12 17 ( 506 1c1d_A) ( 4520 1o6z_A) 0.6238 0.6649 5.8906 ( 1 9 28) 0 0.6238 0.6649 12 11 ( 506 1c1d_A) ( 4549 1o89_A) 0.6666 0.6153 3.8215 ( 0 6 28) 0 0.6666 0.6153 12 13 ( 506 1c1d_A) ( 4573 1oaa ) 0.4166 0.3125 5.7642 ( 0 0 10) 0 0.7482 0.5621 12 16 ( 506 1c1d_A) ( 4585 1obb_A) 0.5831 0.5383 5.7163 ( 0 10 21) 0 0.6658 0.6148 12 13 ( 506 1c1d_A) ( 4588 1obf_O) 0.4166 0.4166 5.5881 ( 0 3 10) 0 0.5833 0.5833 12 12 ( 506 1c1d_A) ( 4668 1oi7_A) 0.5000 0.5999 3.6819 ( 0 1 15) 0 0.5832 0.6997 12 10 ( 506 1c1d_A) ( 4730 1ono_A) 0.4166 0.4166 4.4286 ( 0 0 10) 0 0.6663 0.6663 12 12 ( 506 1c1d_A) ( 4739 1ooe_A) 0.4166 0.3571 5.9751 ( 0 1 10) 0 0.6657 0.5710 12 14 ( 506 1c1d_A) ( 4765 1orr_A) 0.4166 0.1923 5.3196 ( 0 0 10) 0 0.7209 0.3698 12 26 ( 506 1c1d_A) ( 4863 1p1j_A) 0.3430 0.1970 6.3450 ( 1 4 10) 0 0.5480 0.2790 12 25 ( 506 1c1d_A) ( 4943 1p9l_A) 0.4999 0.5453 5.4085 ( 0 2 15) 0 0.6663 0.7267 12 11 ( 506 1c1d_A) ( 5029 1pjq_A) 0.3805 0.3900 4.3960 ( 1 4 21) 0 0.5831 0.6994 12 10 ( 506 1c1d_A) ( 5045 1pl7_A) 0.6664 0.6152 4.7020 ( 0 8 28) 0 0.6664 0.6152 12 13 ( 506 1c1d_A) ( 5082 1pqw_A) 0.6794 0.5428 4.8460 ( 1 9 36) 0 0.6794 0.5428 12 16 ( 506 1c1d_A) ( 5097 1psd_A) 0.5289 0.5289 2.1233 ( 2 12 28) 0 0.6453 0.6453 12 12 ( 506 1c1d_A) ( 5140 1px0_A) 0.4166 0.3125 5.5201 ( 0 2 10) 0 0.7480 0.5620 12 16 ( 506 1c1d_A) ( 5227 1q7c_A) 0.5828 0.3888 6.8573 ( 0 3 21) 0 0.7484 0.5366 12 18 ( 506 1c1d_A) ( 5362 1qki_A) 0.5830 0.5830 6.0056 ( 0 6 21) 0 0.6663 0.6663 12 12 ( 506 1c1d_A) ( 5387 1qmg_A) 0.5833 0.3684 3.0389 ( 0 8 21) 0 0.5833 0.3828 12 19 ( 506 1c1d_A) ( 5406 1qor_A) 0.6663 0.6152 5.1090 ( 0 8 28) 0 0.7485 0.6913 12 13 ( 506 1c1d_A) ( 5409 1qp8_A) 0.5601 0.5225 2.9879 ( 1 9 21) 0 0.6661 0.6150 12 13 ( 506 1c1d_A) ( 5444 1qsg_A) 0.6640 0.4441 8.5866 ( 0 10 28) 0 0.7487 0.4998 12 18 ( 506 1c1d_A) ( 5493 1qyc_A) 0.5000 0.2500 4.0149 ( 0 1 15) 0 0.7481 0.3749 12 24 ( 506 1c1d_A) ( 5571 1r6d_A) 0.4995 0.2500 7.9000 ( 0 5 15) 0 0.7482 0.3749 12 24 ( 506 1c1d_A) ( 5654 1rjw_A) 0.5000 0.4000 4.4821 ( 0 5 15) 0 0.7393 0.6303 12 15 ( 506 1c1d_A) ( 5665 1rkx_A) 0.4996 0.2857 7.4566 ( 0 7 15) 0 0.7482 0.4285 12 21 ( 506 1c1d_A) ( 5786 1say_A) 0.6556 0.6556 2.8922 ( 1 13 28) 0 0.6665 0.6665 12 12 ( 506 1c1d_A) ( 5838 1spx_A) 0.4997 0.3529 7.1492 ( 0 5 15) 0 0.7484 0.5291 12 17 ( 506 1c1d_A) ( 5877 1t2d_A) 0.5832 0.6362 4.8085 ( 0 2 21) 0 0.5832 0.6362 12 11 ( 506 1c1d_A) ( 5942 1u8x_X) 0.4999 0.4999 5.7864 ( 0 7 15) 0 0.5830 0.5830 12 12 ( 506 1c1d_A) ( 5954 1uay_A) 0.4203 0.3500 7.6280 ( 1 5 15) 0 0.6663 0.4999 12 16 ( 506 1c1d_A) ( 6085 1ur5_A) 0.5832 0.5832 4.5872 ( 0 8 21) 0 0.6452 0.6452 12 12 ( 506 1c1d_A) ( 6114 1uuf_A) 0.6516 0.5643 3.0359 ( 1 12 28) 0 0.7806 0.6881 12 14 ( 506 1c1d_A) ( 6257 1vi2_A) 0.5533 0.5310 3.5142 ( 2 13 28) 0 0.7493 0.6918 12 13 ( 506 1c1d_A) ( 6274 1vj0_A) 0.6665 0.5000 4.0643 ( 0 8 28) 0 0.6665 0.5000 12 16 ( 506 1c1d_A) ( 6276 1vj1_A) 0.6665 0.5714 4.0625 ( 0 8 28) 0 0.6665 0.5714 12 14 ( 506 1c1d_A) ( 6292 1vjp_A) 0.3430 0.3158 5.5717 ( 1 4 10) 0 0.6663 0.5713 12 14 ( 506 1c1d_A) ( 6341 1xcb_A) 0.4999 0.7490 5.7079 ( 0 6 15) 0 0.4999 0.7490 12 8 ( 506 1c1d_A) ( 6388 2ae1 ) 0.4999 0.3529 5.8812 ( 0 1 15) 0 0.7487 0.5292 12 17 ( 506 1c1d_A) ( 6420 2cmd ) 0.5000 0.5000 2.4979 ( 0 7 15) 0 0.6367 0.6367 12 12 ( 506 1c1d_A) ( 6426 2dap ) 0.4998 0.5996 6.1566 ( 0 3 15) 0 0.5832 0.6997 12 10 ( 506 1c1d_A) ( 6497 2nac_A) 0.7142 0.6675 2.4169 ( 1 11 36) 0 0.7142 0.6675 12 13 ( 506 1c1d_A) ( 6505 2pgd ) 0.4998 0.4285 6.1505 ( 0 5 15) 0 0.6663 0.5889 12 14 ( 506 1c1d_A) ( 6627 6ldh ) 0.5286 0.4995 3.4332 ( 1 7 21) 0 0.6040 0.5707 12 13 -------------------------------------------------------------------------------------------------------------------------