------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [6378, 2772]: Comparing 1zrn and 1j97_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 19 (12 H + 7 S) secondary structure elements in 1j97_A, of which 18 satisfy the size requirements. 1.19077 [ 1.36043] ((1 . 1) (3 . 3) (4 . 4) (6 . 6) (8 . 7) (9 . 8) (10 . 9) (12 . 10) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 19)) 5.026 {5/55:91} B:0 1.50853 [ 1.58128] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 7) (9 . 8) (10 . 9) (12 . 10) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 19)) 5.477 {9/63:105} B:0 1.67576 [ 1.74634] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 7) (9 . 8) (12 . 10) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 19)) 5.550 {8/50:91} B:0 1.70740 [ 1.77442] ((1 . 1) (3 . 3) (4 . 5) (6 . 6) (8 . 7) (9 . 8) (10 . 9) (12 . 10) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 19)) 5.154 {9/55:91} B:0 2.50004 [ 3.00002] ((1 . 1) (3 . 3) (14 . 12) (16 . 16) (18 . 18) (20 . 19)) 3.595 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.8398 [and 1/min{score2}: 0.7351] [6378, 3127]: Comparing 1zrn and 1k1e_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 18 (10 H + 8 S) secondary structure elements in 1k1e_A, of which 15 satisfy the size requirements. 1.50270 [ 1.50270] ((1 . 2) (8 . 5) (9 . 6) (10 . 7) (12 . 8) (14 . 9) (16 . 11) (17 . 12) (18 . 13) (20 . 16)) 2.715 {1/23:45} B:0 2.50004 [ 2.50004] ((12 . 6) (14 . 9) (16 . 11) (17 . 12) (18 . 13) (20 . 16)) 3.568 {0/9:15} B:0 2.52406 [ 2.52406] ((8 . 5) (9 . 6) (12 . 8) (14 . 9) (16 . 13) (20 . 16)) 3.183 {1/9:15} B:0 2.53905 [ 2.53905] ((12 . 3) (14 . 5) (16 . 6) (17 . 7) (18 . 8) (20 . 9)) 7.819 {1/8:15} B:0 3.00009 [ 3.00009] ((12 . 3) (16 . 6) (17 . 7) (18 . 8) (20 . 12)) 4.993 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.6655 [and 1/min{score2}: 0.6655] [6378, 3551]: Comparing 1zrn and 1l6r_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1l6r_A, of which 19 satisfy the size requirements. 2.50002 [ 3.16668] ((1 . 1) (14 . 16) (16 . 18) (17 . 19) (18 . 20) (20 . 23)) 3.087 {0/5:15} B:0 3.00009 [ 3.80004] ((9 . 1) (12 . 4) (14 . 5) (16 . 6) (18 . 9)) 5.012 {0/3:10} B:0 3.00032 [ 3.80016] ((5 . 13) (8 . 16) (9 . 18) (12 . 20) (14 . 23)) 6.896 {0/4:10} B:0 3.02293 [ 3.81136] ((8 . 3) (9 . 4) (10 . 5) (12 . 6) (19 . 14)) 8.023 {1/8:10} B:0 3.06904 [ 3.83468] ((9 . 1) (14 . 3) (16 . 4) (17 . 5) (19 . 9)) 2.892 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.7323 [and 1/min{score2}: 0.5786] [6378, 3727]: Comparing 1zrn and 1ltq_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 21 (12 H + 9 S) secondary structure elements in 1ltq_A, of which 10 satisfy the size requirements. 1.50014 [ 1.00047] ((1 . 12) (6 . 13) (8 . 14) (9 . 15) (10 . 16) (12 . 17) (14 . 18) (16 . 19) (17 . 20) (18 . 21)) 3.335 {0/26:45} B:0 1.50023 [ 1.00077] ((1 . 12) (6 . 13) (8 . 14) (9 . 15) (10 . 16) (12 . 17) (14 . 18) (16 . 19) (17 . 20) (19 . 21)) 3.775 {0/26:45} B:0 1.66675 [ 1.11141] ((1 . 12) (6 . 13) (8 . 14) (9 . 15) (10 . 16) (12 . 17) (16 . 19) (17 . 20) (18 . 21)) 3.212 {0/22:36} B:0 2.50043 [ 1.66810] ((1 . 12) (8 . 14) (9 . 15) (14 . 16) (16 . 17) (17 . 18)) 6.465 {0/6:15} B:0 3.00003 [ 2.00011] ((8 . 14) (9 . 15) (17 . 18) (18 . 19) (19 . 21)) 3.869 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.9995] [6378, 4164]: Comparing 1zrn and 1n8n_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 19 (10 H + 9 S) secondary structure elements in 1n8n_A, of which 14 satisfy the size requirements. 3.00005 [ 2.80006] ((9 . 4) (14 . 11) (16 . 12) (17 . 13) (20 . 15)) 4.326 {0/4:10} B:0 3.00046 [ 2.80056] ((3 . 6) (10 . 15) (12 . 16) (14 . 17) (16 . 19)) 7.548 {0/9:10} B:0 3.00056 [ 2.80069] ((1 . 4) (3 . 6) (4 . 8) (9 . 16) (12 . 18)) 7.942 {0/6:10} B:0 3.75031 [ 3.50039] ((12 . 12) (14 . 13) (18 . 16) (19 . 18)) 8.121 {0/4:6} B:0 3.75041 [ 3.50051] ((5 . 13) (8 . 17) (9 . 18) (12 . 19)) 8.700 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7169 [and 1/min{score2}: 0.7629] [6378, 4226]: Comparing 1zrn and 1nf2_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 27 (13 H + 14 S) secondary structure elements in 1nf2_A, of which 24 satisfy the size requirements. 2.14288 [ 3.42858] ((1 . 4) (6 . 13) (14 . 20) (16 . 22) (17 . 23) (18 . 24) (20 . 27)) 2.844 {0/10:21} B:0 3.00007 [ 4.80002] ((12 . 12) (14 . 15) (16 . 16) (17 . 17) (18 . 18)) 4.708 {0/4:10} B:0 3.00011 [ 4.80003] ((9 . 1) (12 . 4) (14 . 5) (16 . 6) (18 . 9)) 5.260 {0/4:10} B:0 3.00028 [ 4.80007] ((3 . 10) (8 . 20) (9 . 22) (12 . 24) (14 . 27)) 6.697 {0/2:10} B:0 3.00056 [ 4.80014] ((8 . 5) (9 . 6) (12 . 9) (17 . 13) (18 . 14)) 7.946 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7244 [and 1/min{score2}: 0.4575] [6378, 4326]: Comparing 1zrn and 1nnl_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 20 (12 H + 8 S) secondary structure elements in 1nnl_A, of which 17 satisfy the size requirements. 1.58435 [ 1.65226] ((1 . 2) (3 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (14 . 14) (16 . 15) (17 . 16) (18 . 17) (19 . 19)) 4.328 {7/48:78} B:0 1.65526 [ 1.73653] ((1 . 2) (5 . 3) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (14 . 14) (16 . 15) (17 . 16) (18 . 17) (19 . 19)) 3.768 {6/40:66} B:0 1.93911 [ 1.97745] ((1 . 2) (3 . 3) (4 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (14 . 14) (16 . 15) (17 . 16) (18 . 17) (19 . 19)) 4.566 {9/48:78} B:0 1.99430 [ 2.06163] ((1 . 2) (6 . 3) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (14 . 14) (16 . 15) (17 . 16) (18 . 17) (19 . 19)) 2.864 {6/32:55} B:0 2.53838 [ 2.85993] ((1 . 2) (4 . 4) (9 . 7) (14 . 8) (16 . 10) (20 . 14)) 5.411 {1/8:15} B:0 SIMILARITY (1/min{score1}): 0.6312 [and 1/min{score2}: 0.6052] [6378, 4372]: Comparing 1zrn and 1nrw_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 28 (14 H + 14 S) secondary structure elements in 1nrw_A, of which 25 satisfy the size requirements. 3.00001 [ 5.00000] ((14 . 21) (16 . 23) (17 . 24) (18 . 25) (20 . 28)) 2.854 {0/3:10} B:0 3.00005 [ 5.00001] ((9 . 12) (12 . 15) (14 . 16) (16 . 17) (18 . 19)) 4.328 {0/5:10} B:0 3.00008 [ 5.00002] ((9 . 12) (10 . 13) (12 . 15) (16 . 17) (18 . 19)) 4.894 {0/8:10} B:0 3.00020 [ 5.00004] ((9 . 12) (10 . 13) (16 . 17) (17 . 18) (18 . 19)) 6.155 {0/7:10} B:0 3.06905 [ 5.01537] ((9 . 1) (14 . 3) (16 . 4) (17 . 5) (19 . 9)) 3.624 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.5043 [and 1/min{score2}: 0.3650] [6378, 4461]: Comparing 1zrn and 1o08_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 20 (14 H + 6 S) secondary structure elements in 1o08_A, of which 14 satisfy the size requirements. 1.16013 [ 1.10550] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 7) (9 . 8) (10 . 9) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 20)) 5.225 {5/60:91} B:0 1.17158 [ 1.09859] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 7) (9 . 8) (10 . 9) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18)) 4.911 {3/53:78} B:0 1.17369 [ 1.10113] ((1 . 1) (3 . 2) (5 . 4) (6 . 5) (8 . 7) (9 . 8) (10 . 9) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 20)) 4.331 {3/51:78} B:0 1.45306 [ 1.40251] ((1 . 1) (3 . 2) (4 . 4) (8 . 7) (9 . 8) (10 . 9) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 18) (20 . 20)) 4.789 {5/42:66} B:0 1.87865 [ 1.75448] ((1 . 1) (8 . 7) (9 . 8) (10 . 9) (14 . 12) (16 . 14) (17 . 15) (18 . 18)) 2.998 {1/18:28} B:0 SIMILARITY (1/min{score1}): 0.8620 [and 1/min{score2}: 0.9103] [6378, 5257]: Comparing 1zrn and 1q92_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 14 (8 H + 6 S) secondary structure elements in 1q92_A, of which 13 satisfy the size requirements. 1.50772 [ 1.38320] ((1 . 1) (3 . 2) (5 . 4) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (16 . 11) (18 . 12) (19 . 13) (20 . 14)) 3.977 {4/35:55} B:0 1.51900 [ 1.32878] ((1 . 1) (3 . 2) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (16 . 11) (18 . 12) (19 . 13) (20 . 14)) 2.908 {2/28:45} B:0 1.58046 [ 1.50828] ((1 . 1) (3 . 2) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (16 . 11) (18 . 12) (19 . 13) (20 . 14)) 4.637 {6/43:66} B:0 1.61472 [ 1.51665] ((1 . 1) (3 . 2) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (16 . 11) (18 . 12) (19 . 13)) 4.349 {5/37:55} B:0 1.97569 [ 1.89992] ((1 . 1) (3 . 2) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (16 . 11) (18 . 13)) 4.334 {5/28:45} B:0 SIMILARITY (1/min{score1}): 0.6633 [and 1/min{score2}: 0.7526] [6378, 5415]: Comparing 1zrn and 1qq5_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 20 (14 H + 6 S) secondary structure elements in 1qq5_A, of which 18 satisfy the size requirements. 1.01868 [ 1.21097] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 10) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 19) (20 . 20)) 1.648 {4/76:105} B:0 1.66669 [ 2.00001] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (9 . 7) (12 . 10) (14 . 12) (16 . 16) (19 . 19)) 2.234 {0/25:36} B:0 1.66832 [ 2.00096] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (9 . 7) (12 . 10) (16 . 16) (19 . 19) (20 . 20)) 2.416 {1/24:36} B:0 2.52094 [ 2.54274] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 11) (14 . 12) (16 . 14) (17 . 15) (18 . 16) (19 . 19) (20 . 20)) 4.725 {16/64:91} B:0 3.00043 [ 3.60025] ((3 . 4) (8 . 12) (9 . 14) (12 . 16) (16 . 19)) 7.410 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.9817 [and 1/min{score2}: 0.8258] [6378, 5494]: Comparing 1zrn and 1qyi_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 29 (23 H + 6 S) secondary structure elements in 1qyi_A, of which 23 satisfy the size requirements. 1.16532 [ 1.67176] ((1 . 1) (3 . 2) (4 . 5) (5 . 6) (6 . 13) (8 . 15) (9 . 16) (10 . 17) (14 . 22) (16 . 24) (17 . 25) (18 . 26) (19 . 28) (20 . 29)) 5.122 {5/59:91} B:0 1.17242 [ 1.77449] ((1 . 1) (3 . 2) (4 . 5) (6 . 13) (8 . 15) (9 . 16) (10 . 17) (14 . 22) (16 . 24) (17 . 25) (18 . 26) (19 . 28) (20 . 29)) 4.479 {3/52:78} B:0 1.68909 [ 2.20863] ((1 . 1) (3 . 2) (5 . 13) (8 . 15) (9 . 16) (10 . 17) (14 . 22) (16 . 24) (17 . 25) (19 . 26) (20 . 29)) 4.244 {5/34:55} B:0 1.81652 [ 2.60180] ((1 . 1) (5 . 11) (8 . 15) (9 . 16) (16 . 24) (17 . 25) (18 . 26) (19 . 28) (20 . 29)) 5.282 {2/15:36} B:0 3.00001 [ 4.60000] ((8 . 15) (9 . 16) (10 . 17) (14 . 22) (19 . 26)) 3.194 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8743 [and 1/min{score2}: 0.6007] [6378, 5661]: Comparing 1zrn and 1rkq_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 28 (14 H + 14 S) secondary structure elements in 1rkq_A, of which 24 satisfy the size requirements. 2.14300 [ 3.42861] ((1 . 4) (5 . 10) (6 . 13) (14 . 21) (16 . 23) (18 . 25) (20 . 28)) 4.383 {0/11:21} B:0 3.00001 [ 4.80000] ((14 . 21) (16 . 23) (17 . 24) (18 . 25) (20 . 28)) 2.698 {0/3:10} B:0 3.00005 [ 4.80001] ((9 . 1) (12 . 4) (14 . 5) (16 . 6) (18 . 9)) 4.331 {0/4:10} B:0 3.00042 [ 4.80010] ((3 . 10) (8 . 21) (9 . 23) (12 . 25) (14 . 26)) 7.399 {0/6:10} B:0 3.06904 [ 4.81735] ((9 . 1) (14 . 3) (16 . 4) (17 . 5) (19 . 9)) 3.342 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.7216 [and 1/min{score2}: 0.4572] [6378, 5664]: Comparing 1zrn and 1rku_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 17 (10 H + 7 S) secondary structure elements in 1rku_A, of which 15 satisfy the size requirements. 1.56924 [ 1.56924] ((1 . 1) (3 . 2) (8 . 6) (9 . 7) (10 . 8) (14 . 11) (16 . 12) (17 . 13) (18 . 14) (20 . 17)) 3.140 {2/20:45} B:0 1.57603 [ 1.57603] ((1 . 1) (3 . 2) (6 . 5) (8 . 6) (9 . 7) (10 . 8) (12 . 9) (14 . 11) (16 . 12) (17 . 13) (18 . 14) (20 . 17)) 4.647 {5/36:66} B:0 1.92149 [ 1.92149] ((1 . 1) (3 . 2) (8 . 6) (9 . 7) (10 . 8) (12 . 9) (14 . 11) (16 . 12) (17 . 13) (18 . 14) (20 . 17)) 4.407 {5/28:55} B:0 2.21121 [ 2.21121] ((1 . 1) (3 . 2) (8 . 6) (9 . 7) (10 . 8) (12 . 9) (16 . 12) (17 . 13) (19 . 14) (20 . 17)) 4.454 {5/24:45} B:0 2.29724 [ 2.29724] ((1 . 1) (6 . 2) (8 . 6) (9 . 7) (10 . 8) (12 . 9) (14 . 11) (16 . 12) (17 . 13) (18 . 14) (20 . 17)) 4.366 {6/27:55} B:0 SIMILARITY (1/min{score1}): 0.6373 [and 1/min{score2}: 0.6373] [6378, 5690]: Comparing 1zrn and 1rql_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 19 (14 H + 5 S) secondary structure elements in 1rql_A, of which 17 satisfy the size requirements. 1.07329 [ 1.21557] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (8 . 7) (9 . 8) (10 . 9) (14 . 11) (16 . 13) (17 . 14) (18 . 15) (19 . 18) (20 . 19)) 4.832 {1/58:91} B:0 2.14347 [ 2.42899] ((9 . 8) (10 . 9) (14 . 11) (16 . 13) (17 . 14) (18 . 15) (20 . 17)) 6.304 {0/14:21} B:0 2.50003 [ 2.83335] ((1 . 1) (8 . 7) (9 . 8) (10 . 9) (18 . 13) (19 . 15)) 3.242 {0/9:15} B:0 3.00016 [ 3.40011] ((10 . 11) (16 . 15) (17 . 17) (19 . 18) (20 . 19)) 5.793 {0/4:10} B:0 3.00063 [ 3.40043] ((5 . 9) (8 . 14) (9 . 15) (14 . 17) (16 . 18)) 8.171 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.9317 [and 1/min{score2}: 0.8227] [6378, 5857]: Comparing 1zrn and 1su4_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 72 (42 H + 30 S) secondary structure elements in 1su4_A, of which 17 satisfy the size requirements. 1.56336 [ 1.69326] ((1 . 25) (8 . 48) (9 . 49) (10 . 50) (12 . 54) (14 . 55) (16 . 56) (17 . 57) (18 . 58) (19 . 60) (20 . 61)) 8.356 {3/24:55} B:0 2.50002 [ 2.83335] ((9 . 49) (12 . 51) (14 . 55) (16 . 56) (18 . 58) (19 . 60)) 2.983 {0/8:15} B:0 3.00000 [ 3.40000] ((12 . 51) (16 . 56) (17 . 57) (18 . 58) (19 . 60)) 2.083 {0/5:10} B:0 3.00004 [ 3.40003] ((16 . 49) (17 . 50) (18 . 51) (19 . 54) (20 . 55)) 4.161 {0/1:10} B:0 3.00016 [ 3.40011] ((9 . 51) (12 . 54) (14 . 55) (16 . 58) (18 . 60)) 5.823 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7440 [and 1/min{score2}: 0.6739] [6378, 6278]: Comparing 1zrn and 1vj5_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 47 (32 H + 15 S) secondary structure elements in 1vj5_A, of which 16 satisfy the size requirements. 1.26243 [ 1.34361] ((1 . 1) (5 . 3) (6 . 8) (8 . 10) (9 . 11) (10 . 12) (12 . 13) (14 . 15) (16 . 17) (17 . 18) (18 . 19) (20 . 20)) 3.837 {2/36:66} B:0 1.28542 [ 1.36279] ((1 . 1) (4 . 4) (5 . 7) (6 . 8) (8 . 10) (9 . 11) (12 . 13) (14 . 15) (16 . 17) (17 . 18) (18 . 19) (20 . 20)) 3.419 {3/41:66} B:0 1.33445 [ 1.38628] ((1 . 1) (3 . 3) (4 . 4) (5 . 7) (6 . 8) (8 . 10) (9 . 11) (12 . 13) (14 . 15) (16 . 17) (17 . 18) (18 . 19) (20 . 20)) 3.656 {5/46:78} B:0 2.14959 [ 2.29126] ((1 . 1) (4 . 4) (5 . 7) (6 . 8) (8 . 10) (9 . 11) (19 . 19)) 4.414 {1/14:21} B:0 2.50053 [ 2.66711] ((9 . 11) (10 . 12) (12 . 13) (14 . 15) (16 . 19) (17 . 20)) 6.840 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.7921 [and 1/min{score2}: 0.7443] [6378, 6294]: Comparing 1zrn and 1vjr_A, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 28 (13 H + 15 S) secondary structure elements in 1vjr_A, of which 19 satisfy the size requirements. 2.50081 [ 3.16707] ((1 . 6) (14 . 21) (16 . 23) (17 . 24) (18 . 25) (20 . 26)) 7.595 {0/8:15} B:0 2.50095 [ 3.16713] ((1 . 6) (14 . 21) (16 . 23) (17 . 24) (19 . 25) (20 . 26)) 7.896 {0/8:15} B:0 2.51653 [ 3.17485] ((1 . 6) (4 . 10) (14 . 21) (17 . 24) (19 . 27) (20 . 28)) 7.307 {1/10:15} B:0 3.00004 [ 3.80002] ((12 . 23) (14 . 24) (16 . 25) (17 . 26) (18 . 27)) 4.212 {0/4:10} B:0 3.00017 [ 3.80009] ((10 . 21) (12 . 23) (16 . 25) (17 . 26) (18 . 27)) 5.932 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7955 [and 1/min{score2}: 0.6302] [6378, 6378]: Comparing 1zrn and 1zrn, based on their crossing files. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. There are 20 (12 H + 8 S) secondary structure elements in 1zrn, of which 15 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (9 . 9) (10 . 10) (12 . 12) (14 . 14) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20)) 0.000 {0/77:105} B:0 1.15386 [ 1.15386] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (9 . 9) (10 . 10) (12 . 12) (14 . 14) (17 . 17) (19 . 18) (20 . 20)) 1.415 {0/59:78} B:0 1.36364 [ 1.36364] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (9 . 9) (12 . 12) (14 . 14) (16 . 16) (17 . 17) (18 . 19) (20 . 20)) 1.543 {0/39:55} B:0 2.51776 [ 2.51776] ((3 . 5) (5 . 10) (8 . 14) (9 . 16) (12 . 18) (14 . 20)) 9.453 {1/10:15} B:0 2.65929 [ 2.65929] ((3 . 5) (4 . 6) (8 . 14) (9 . 16) (12 . 18) (14 . 20)) 6.011 {2/11:15} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] -------------------------------------------------------------------------------------------------------------------------