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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5011 1pgv_A)  (   44 1a4y_A)     0.9981   0.3333   4.7035 (   0    0   55)   0     0.9981   0.3333   11  33
( 5011 1pgv_A)  (   83 1a9n_A)     0.4545   0.4545   1.1779 (   0    0   10)   0     0.7271   0.7271   11  11
( 5011 1pgv_A)  (  791 1dce_A)     0.8180   0.8180   3.1571 (   0    0   36)   0     0.8180   0.8180   11  11
( 5011 1pgv_A)  ( 1616 1fs2_A)     0.9979   0.6468   4.8502 (   0    0   55)   0     0.9979   0.6468   11  17
( 5011 1pgv_A)  ( 2109 1h6t_A)     0.9978   0.6468   4.9154 (   0    1   55)   0     0.9978   0.6468   11  17
( 5011 1pgv_A)  ( 2111 1h6u_A)     0.9978   0.5788   4.8804 (   0    1   55)   0     0.9978   0.5788   11  19
( 5011 1pgv_A)  ( 2488 1igr_A)     0.5454   0.8570   3.1779 (   0    2   15)   0     0.5454   0.8570   11   7
( 5011 1pgv_A)  ( 2490 1igr_A)     0.4545   0.6249   3.8160 (   0    0   10)   0     0.6363   0.8747   11   8
( 5011 1pgv_A)  ( 2547 1io0_A)     0.9999   0.9999   1.9191 (   0   11   55)   0     0.9999   0.9999   11  11
( 5011 1pgv_A)  ( 2955 1jl5_A)     0.5454   0.3333   3.1764 (   0    0   15)   0     0.6363   0.3889   11  18
( 5011 1pgv_A)  ( 3856 1m6b_A)     0.5454   0.7499   3.1399 (   0    0   15)   0     0.5454   0.7499   11   8
( 5011 1pgv_A)  ( 3857 1m6b_A)     0.7272   0.6666   2.7356 (   0    6   28)   0     0.7272   0.6666   11  12
( 5011 1pgv_A)  ( 3890 1m9l_A)     0.7266   0.4210   5.4441 (   0    0   28)   0     0.8171   0.4736   11  19
( 5011 1pgv_A)  ( 4167 1n8y_C)     0.6363   0.6999   3.4089 (   0    5   21)   0     0.7267   0.7991   11  10
( 5011 1pgv_A)  ( 4169 1n8y_C)     0.7272   0.6666   2.8320 (   0    6   28)   0     0.7272   0.6666   11  12
( 5011 1pgv_A)  ( 4516 1o6v_A)     0.9978   0.3235   4.8973 (   0    2   55)   0     0.9978   0.3235   11  34
( 5011 1pgv_A)  ( 4645 1ogq_A)     0.8170   0.3333   5.3922 (   0    8   36)   0     0.9928   0.4073   11  27
( 5011 1pgv_A)  ( 4850 1ozn_A)     0.6359   0.4999   5.9336 (   0    4   21)   0     0.6363   0.5000   11  14
( 5011 1pgv_A)  ( 4940 1p9a_G)     0.5455   0.4286   1.7224 (   0    0   15)   0     0.5455   0.4286   11  14
( 5011 1pgv_A)  ( 5011 1pgv_A)     1.0000   1.0000   0.0000 (   0   17   55)   0     1.0000   1.0000   11  11
( 5011 1pgv_A)  ( 6362 1yrg_A)     0.9990   0.4782   4.0604 (   0    1   55)   0     0.9990   0.4782   11  23

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