------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [776, 386]: Comparing 1dab_A and 1bhe, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 37 (3 H + 34 S) secondary structure elements in 1bhe, of which 33 satisfy the size requirements. 1.83826 [ 1.28871] ((2 . 3) (3 . 4) (5 . 6) (6 . 7) (7 . 10) (8 . 11) (9 . 12) (10 . 15) (11 . 16) (12 . 17) (13 . 18) (14 . 19) (15 . 20) (17 . 22) (18 . 23) (19 . 24) (20 . 25) (22 . 26) (23 . 27) (24 . 28) (25 . 29) (26 . 30) (27 . 31) (28 . 32) (29 . 33) (31 . 34) (32 . 35) (34 . 36) (35 . 37)) 4.726 {17/167:406} B:0 1.92599 [ 1.22246] ((1 . 7) (2 . 10) (3 . 11) (4 . 12) (5 . 15) (6 . 16) (7 . 17) (8 . 18) (9 . 19) (10 . 20) (11 . 21) (12 . 22) (13 . 23) (14 . 24) (15 . 25) (17 . 26) (18 . 27) (19 . 28) (20 . 29) (21 . 30) (22 . 31) (23 . 32) (24 . 33) (26 . 34) (27 . 35) (29 . 36) (30 . 37)) 3.173 {2/168:351} B:0 1.95796 [ 1.33433] ((1 . 6) (2 . 7) (3 . 10) (4 . 11) (5 . 12) (6 . 15) (7 . 16) (8 . 17) (9 . 18) (10 . 19) (11 . 20) (12 . 21) (13 . 22) (14 . 23) (15 . 24) (18 . 26) (19 . 27) (20 . 28) (21 . 29) (22 . 30) (23 . 31) (24 . 32) (25 . 33) (27 . 34) (28 . 35) (30 . 36) (31 . 37)) 5.062 {16/163:351} B:0 2.03422 [ 1.38866] ((1 . 6) (3 . 10) (4 . 11) (5 . 12) (6 . 15) (7 . 16) (8 . 17) (9 . 18) (10 . 19) (11 . 20) (12 . 21) (13 . 22) (14 . 23) (15 . 24) (18 . 26) (19 . 27) (20 . 28) (21 . 29) (22 . 30) (23 . 31) (24 . 32) (25 . 33) (27 . 34) (28 . 35) (30 . 36) (31 . 37)) 4.976 {15/146:325} B:0 2.06261 [ 1.47197] ((18 . 1) (20 . 3) (21 . 4) (23 . 6) (24 . 7) (25 . 10) (26 . 11) (27 . 12) (28 . 15) (29 . 16) (30 . 17) (31 . 18) (32 . 19) (33 . 20) (34 . 21) (36 . 23) (37 . 24) (40 . 26) (41 . 28) (42 . 29) (43 . 31) (44 . 32) (45 . 33) (47 . 34) (50 . 35) (51 . 36)) 4.830 {19/158:325} B:0 SIMILARITY (1/min{score1}): 0.5959 [and 1/min{score2}: 0.9368] [776, 429]: Comparing 1dab_A and 1bn8_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 45 (13 H + 32 S) secondary structure elements in 1bn8_A, of which 32 satisfy the size requirements. 2.26207 [ 1.39642] ((21 . 4) (24 . 6) (25 . 7) (26 . 12) (27 . 13) (28 . 14) (29 . 15) (30 . 16) (31 . 17) (32 . 20) (33 . 21) (34 . 22) (35 . 26) (36 . 27) (37 . 28) (39 . 31) (40 . 32) (41 . 34) (42 . 35) (43 . 37) (44 . 38) (45 . 40) (46 . 41)) 3.605 {7/146:253} B:0 2.39622 [ 1.58007] ((3 . 7) (4 . 12) (5 . 13) (6 . 14) (7 . 15) (8 . 16) (9 . 17) (10 . 20) (11 . 21) (12 . 22) (13 . 26) (14 . 27) (15 . 28) (17 . 31) (18 . 32) (20 . 34) (21 . 35) (22 . 36) (23 . 37) (24 . 38) (25 . 40) (26 . 41)) 4.313 {13/113:231} B:0 2.40796 [ 1.83097] ((8 . 4) (11 . 6) (12 . 7) (13 . 12) (14 . 13) (15 . 14) (17 . 16) (18 . 17) (19 . 20) (20 . 21) (21 . 22) (22 . 26) (23 . 27) (24 . 28) (26 . 31) (27 . 32) (29 . 34) (30 . 35) (31 . 36) (32 . 37) (33 . 38) (34 . 40) (35 . 41)) 4.332 {22/133:253} B:0 2.50605 [ 1.88801] ((4 . 4) (7 . 6) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 20) (17 . 22) (18 . 26) (19 . 27) (20 . 28) (22 . 31) (23 . 32) (25 . 34) (26 . 35) (27 . 36) (28 . 37) (29 . 38) (30 . 40) (31 . 41)) 4.060 {21/124:231} B:0 2.53134 [ 1.72500] ((14 . 4) (17 . 6) (18 . 7) (19 . 12) (20 . 13) (21 . 14) (22 . 15) (23 . 16) (24 . 17) (25 . 20) (26 . 21) (27 . 22) (28 . 26) (29 . 27) (30 . 28) (32 . 31) (33 . 32) (35 . 34) (36 . 35) (39 . 38) (40 . 40)) 4.228 {15/110:210} B:0 SIMILARITY (1/min{score1}): 0.4614 [and 1/min{score2}: 0.7487] [776, 776]: Comparing 1dab_A and 1dab_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 24) (25 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33) (34 . 34) (35 . 35) (36 . 36) (37 . 37) (39 . 39) (40 . 40) (41 . 41) (42 . 42) (43 . 43) (44 . 44) (45 . 45) (46 . 46) (47 . 47) (50 . 50) (51 . 51) (52 . 52) (53 . 53) (55 . 55) (56 . 56) (57 . 57)) 0.000 {0/913:1326} B:0 2.08003 [ 2.08003] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (11 . 8) (12 . 9) (13 . 10) (14 . 11) (15 . 12) (18 . 15) (21 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (29 . 26) (30 . 27) (31 . 28) (32 . 29) (36 . 33) (39 . 36) (46 . 43) (47 . 44) (50 . 45) (57 . 53)) 2.807 {2/188:300} B:0 2.26092 [ 2.26092] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (8 . 11) (11 . 14) (12 . 15) (15 . 18) (18 . 21) (19 . 22) (20 . 23) (21 . 24) (22 . 25) (26 . 29) (27 . 30) (28 . 31) (29 . 32) (33 . 36) (36 . 39) (44 . 47) (45 . 50) (52 . 56) (53 . 57)) 3.421 {2/153:253} B:0 2.26092 [ 2.26092] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (11 . 8) (14 . 11) (15 . 12) (18 . 15) (21 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (29 . 26) (30 . 27) (31 . 28) (32 . 29) (36 . 33) (39 . 36) (47 . 44) (50 . 45) (56 . 52) (57 . 53)) 3.421 {2/153:253} B:0 2.47622 [ 2.47622] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (8 . 11) (9 . 12) (10 . 13) (15 . 18) (18 . 21) (19 . 22) (20 . 23) (26 . 29) (27 . 30) (28 . 31) (29 . 32) (33 . 36) (36 . 39) (43 . 46) (44 . 47) (45 . 50) (53 . 57)) 2.984 {2/133:210} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [776, 1119]: Comparing 1dab_A and 1ee6_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 23 (0 H + 23 S) secondary structure elements in 1ee6_A, of which 21 satisfy the size requirements. 2.47650 [ 1.00462] ((7 . 1) (8 . 2) (9 . 3) (10 . 4) (11 . 5) (12 . 6) (14 . 7) (15 . 8) (17 . 9) (18 . 10) (19 . 11) (20 . 12) (21 . 13) (22 . 14) (23 . 15) (24 . 16) (25 . 17) (26 . 18) (27 . 19) (28 . 20) (30 . 22)) 2.924 {4/110:210} B:0 2.47683 [ 1.00956] ((10 . 1) (11 . 2) (12 . 3) (13 . 4) (14 . 5) (15 . 6) (17 . 7) (18 . 8) (20 . 9) (21 . 10) (22 . 11) (23 . 12) (24 . 13) (25 . 14) (26 . 15) (27 . 16) (28 . 17) (29 . 18) (30 . 19) (31 . 20) (33 . 22)) 3.286 {5/114:210} B:0 2.60463 [ 1.11427] ((6 . 1) (7 . 2) (8 . 3) (9 . 4) (10 . 5) (11 . 6) (13 . 7) (14 . 8) (17 . 10) (18 . 11) (19 . 12) (20 . 13) (21 . 14) (22 . 15) (23 . 16) (24 . 17) (25 . 18) (26 . 19) (27 . 20) (29 . 22)) 4.275 {7/93:190} B:0 2.63867 [ 1.41383] ((6 . 1) (7 . 2) (8 . 3) (9 . 4) (10 . 5) (11 . 6) (13 . 7) (14 . 9) (17 . 10) (18 . 11) (19 . 12) (20 . 13) (21 . 14) (22 . 15) (23 . 16) (24 . 17) (25 . 18) (26 . 19) (27 . 20) (29 . 22)) 4.802 {12/93:190} B:0 2.47624 [ 1.00082] ((13 . 1) (14 . 2) (15 . 3) (17 . 5) (18 . 6) (19 . 4) (20 . 7) (21 . 8) (23 . 9) (24 . 10) (25 . 11) (26 . 12) (27 . 13) (28 . 14) (29 . 15) (30 . 16) (31 . 17) (32 . 18) (33 . 19) (34 . 20) (36 . 22)) 3.525 {2/115:210} B:1 SIMILARITY (1/min{score1}): 0.4038 [and 1/min{score2}: 0.9994] [776, 1324]: Comparing 1dab_A and 1ezg_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 6 (0 H + 6 S) secondary structure elements in 1ezg_A, of which 6 satisfy the size requirements. 8.66667 [ 1.00005] ((5 . 1) (8 . 2) (11 . 3) (14 . 4) (17 . 5) (20 . 6)) 1.899 {0/0:15} B:0 8.66667 [ 1.00007] ((11 . 1) (14 . 2) (17 . 3) (20 . 4) (23 . 5) (26 . 6)) 2.072 {0/0:15} B:0 8.66667 [ 1.00019] ((22 . 1) (25 . 2) (28 . 3) (31 . 4) (34 . 5) (37 . 6)) 2.670 {0/0:15} B:0 8.66667 [ 1.00158] ((37 . 1) (40 . 2) (42 . 3) (44 . 4) (47 . 5) (51 . 6)) 4.517 {0/0:15} B:0 8.66667 [ 1.00221] ((37 . 1) (40 . 2) (42 . 3) (44 . 4) (47 . 5) (55 . 6)) 4.912 {0/0:15} B:0 SIMILARITY (1/min{score1}): 0.1154 [and 1/min{score2}: 0.9999] [776, 1913]: Comparing 1dab_A and 1gq8_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 34 (9 H + 25 S) secondary structure elements in 1gq8_A, of which 27 satisfy the size requirements. 2.26156 [ 1.17880] ((15 . 1) (18 . 3) (19 . 4) (20 . 5) (21 . 6) (22 . 7) (23 . 9) (25 . 10) (26 . 12) (27 . 13) (28 . 14) (29 . 15) (30 . 16) (31 . 17) (32 . 18) (33 . 19) (34 . 20) (35 . 21) (36 . 22) (37 . 25) (39 . 26) (41 . 28) (43 . 30)) 3.240 {6/144:253} B:0 3.05924 [ 1.59120] ((1 . 10) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (6 . 16) (7 . 17) (8 . 18) (9 . 19) (10 . 20) (11 . 21) (12 . 22) (13 . 23) (14 . 25) (15 . 26) (18 . 28) (21 . 30)) 2.738 {4/86:136} B:0 2.16675 [ 1.12561] ((9 . 1) (12 . 3) (13 . 4) (15 . 6) (17 . 5) (19 . 7) (20 . 9) (22 . 10) (23 . 12) (24 . 13) (25 . 14) (26 . 15) (27 . 16) (28 . 17) (29 . 18) (30 . 19) (31 . 20) (32 . 21) (33 . 22) (34 . 23) (35 . 25) (36 . 26) (39 . 28) (41 . 30)) 3.494 {3/162:276} B:1 2.16681 [ 1.12600] ((9 . 1) (13 . 4) (15 . 3) (17 . 5) (18 . 6) (19 . 7) (20 . 9) (22 . 10) (23 . 12) (24 . 13) (25 . 14) (26 . 15) (27 . 16) (28 . 17) (29 . 18) (30 . 19) (31 . 20) (32 . 21) (33 . 22) (34 . 23) (35 . 25) (36 . 26) (39 . 28) (41 . 30)) 3.329 {4/161:276} B:1 2.16718 [ 1.12867] ((12 . 1) (13 . 4) (15 . 3) (17 . 5) (18 . 6) (19 . 7) (20 . 9) (22 . 10) (23 . 12) (24 . 13) (25 . 14) (26 . 15) (27 . 16) (28 . 17) (29 . 18) (30 . 19) (31 . 20) (32 . 21) (33 . 22) (34 . 23) (35 . 25) (36 . 26) (39 . 28) (41 . 30)) 3.254 {6/161:276} B:1 SIMILARITY (1/min{score1}): 0.4615 [and 1/min{score2}: 0.8884] [776, 2132]: Comparing 1dab_A and 1h80_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 41 (7 H + 34 S) secondary structure elements in 1h80_A, of which 35 satisfy the size requirements. 3.13090 [ 3.00197] ((10 . 2) (13 . 5) (15 . 6) (17 . 8) (18 . 9) (19 . 10) (20 . 11) (21 . 12) (22 . 13) (24 . 14) (25 . 15) (26 . 18) (27 . 19) (28 . 20) (29 . 21) (30 . 22) (31 . 23) (32 . 25) (33 . 26) (34 . 27) (36 . 28) (39 . 33) (40 . 37) (41 . 39) (44 . 29)) 6.761 {43/145:300} B:1 1.93708 [ 1.33171] ((9 . 2) (10 . 9) (12 . 5) (13 . 6) (15 . 8) (17 . 10) (18 . 11) (19 . 12) (20 . 13) (21 . 17) (22 . 14) (23 . 15) (24 . 18) (25 . 19) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (30 . 25) (31 . 26) (32 . 27) (34 . 28) (35 . 29) (36 . 33) (37 . 37) (39 . 38) (40 . 39)) 6.043 {12/162:351} B:2 1.97361 [ 1.43477] ((3 . 2) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (14 . 13) (15 . 14) (17 . 15) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 25) (25 . 26) (26 . 27) (27 . 28) (29 . 29) (30 . 33) (32 . 37) (33 . 17) (34 . 39) (36 . 38)) 6.742 {18/166:351} B:2 2.28260 [ 1.58939] ((12 . 6) (13 . 9) (14 . 10) (15 . 8) (17 . 13) (18 . 11) (19 . 12) (20 . 15) (21 . 17) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 25) (28 . 26) (29 . 27) (31 . 28) (32 . 29) (34 . 33) (35 . 37) (36 . 38) (40 . 39)) 5.940 {13/130:253} B:2 2.83530 [ 2.65579] ((10 . 2) (14 . 5) (15 . 6) (17 . 8) (18 . 9) (19 . 10) (20 . 11) (21 . 12) (22 . 13) (23 . 14) (25 . 15) (26 . 18) (27 . 19) (28 . 20) (29 . 21) (30 . 22) (31 . 23) (32 . 25) (33 . 26) (34 . 27) (36 . 28) (39 . 33) (40 . 29) (41 . 39) (42 . 37)) 5.657 {38/146:300} B:2 SIMILARITY (1/min{score1}): 0.5162 [and 1/min{score2}: 0.7509] [776, 2196]: Comparing 1dab_A and 1hf2_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 20 (4 H + 16 S) secondary structure elements in 1hf2_A, of which 10 satisfy the size requirements. 5.45633 [ 3.53516] ((29 . 10) (30 . 11) (32 . 12) (33 . 13) (35 . 14) (36 . 15) (37 . 16) (39 . 17) (41 . 18) (43 . 19)) 5.356 {6/17:45} B:0 5.46788 [ 3.57700] ((32 . 10) (33 . 11) (35 . 12) (36 . 13) (37 . 14) (39 . 15) (40 . 16) (41 . 17) (43 . 18) (46 . 19)) 5.757 {5/14:45} B:0 5.78318 [ 1.54489] ((11 . 10) (12 . 11) (14 . 12) (15 . 13) (17 . 14) (18 . 15) (21 . 16) (24 . 17) (27 . 19)) 4.664 {1/7:36} B:0 5.83353 [ 4.54812] ((5 . 10) (6 . 11) (8 . 12) (9 . 13) (11 . 14) (12 . 15) (14 . 16) (17 . 17) (18 . 18) (21 . 19)) 3.052 {5/11:45} B:0 5.96919 [ 3.53807] ((25 . 10) (26 . 11) (28 . 12) (29 . 13) (31 . 14) (32 . 15) (34 . 16) (35 . 18) (37 . 19)) 4.121 {6/17:36} B:0 SIMILARITY (1/min{score1}): 0.1916 [and 1/min{score2}: 0.6473] [776, 2208]: Comparing 1dab_A and 1hg8_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 38 (3 H + 35 S) secondary structure elements in 1hg8_A, of which 33 satisfy the size requirements. 2.01477 [ 1.67210] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (6 . 10) (7 . 12) (8 . 13) (9 . 14) (10 . 15) (11 . 16) (12 . 17) (13 . 19) (14 . 20) (15 . 21) (17 . 23) (18 . 24) (19 . 25) (20 . 26) (21 . 27) (22 . 28) (23 . 30) (24 . 31) (25 . 32) (26 . 33) (27 . 34) (28 . 35) (29 . 36) (30 . 37)) 4.879 {31/197:406} B:0 2.44135 [ 2.29953] ((1 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 12) (11 . 13) (12 . 14) (13 . 15) (14 . 16) (15 . 17) (17 . 20) (18 . 21) (19 . 22) (20 . 23) (21 . 24) (22 . 25) (23 . 26) (24 . 27) (25 . 28) (26 . 30) (27 . 31) (28 . 32) (29 . 33) (30 . 34) (31 . 35) (32 . 36) (33 . 37)) 5.500 {49/216:435} B:0 1.79392 [ 1.14113] ((15 . 3) (17 . 5) (18 . 6) (19 . 7) (20 . 8) (21 . 9) (22 . 10) (23 . 12) (24 . 13) (25 . 14) (26 . 15) (27 . 16) (28 . 17) (29 . 19) (30 . 20) (31 . 21) (32 . 22) (33 . 23) (34 . 24) (35 . 25) (36 . 26) (37 . 28) (39 . 29) (40 . 32) (41 . 30) (43 . 33) (44 . 34) (46 . 36) (51 . 37)) 5.728 {5/223:406} B:1 1.73532 [ 1.10772] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 12) (12 . 13) (13 . 14) (14 . 15) (15 . 16) (17 . 19) (18 . 20) (19 . 21) (20 . 22) (21 . 23) (22 . 24) (23 . 25) (24 . 26) (25 . 27) (26 . 28) (27 . 30) (28 . 31) (29 . 32) (31 . 34) (32 . 35) (33 . 33) (34 . 37) (36 . 36)) 3.805 {10/226:435} B:2 1.98805 [ 1.42249] ((17 . 3) (19 . 5) (20 . 6) (21 . 7) (22 . 8) (23 . 9) (24 . 10) (25 . 12) (26 . 13) (27 . 14) (28 . 15) (29 . 16) (30 . 17) (31 . 19) (32 . 20) (33 . 21) (34 . 22) (35 . 23) (36 . 24) (39 . 27) (41 . 31) (42 . 32) (43 . 34) (44 . 35) (45 . 33) (46 . 37) (50 . 36)) 5.103 {21/180:351} B:2 SIMILARITY (1/min{score1}): 0.6139 [and 1/min{score2}: 0.9560] [776, 3179]: Comparing 1dab_A and 1k4z_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 19 (1 H + 18 S) secondary structure elements in 1k4z_A, of which 16 satisfy the size requirements. 3.57464 [ 2.11858] ((29 . 1) (30 . 2) (32 . 3) (33 . 4) (35 . 6) (36 . 7) (37 . 9) (39 . 10) (40 . 11) (41 . 12) (42 . 13) (43 . 14) (44 . 15) (47 . 17) (53 . 19)) 5.392 {10/48:105} B:0 3.71918 [ 1.28319] ((2 . 1) (3 . 2) (5 . 3) (6 . 4) (8 . 6) (9 . 7) (11 . 9) (12 . 10) (14 . 11) (15 . 12) (17 . 13) (18 . 14) (20 . 15) (23 . 17)) 4.304 {1/10:91} B:0 3.74428 [ 1.67804] ((29 . 1) (33 . 2) (35 . 3) (36 . 4) (37 . 6) (39 . 7) (40 . 9) (41 . 10) (42 . 11) (43 . 12) (44 . 13) (46 . 14) (50 . 15) (52 . 17)) 4.707 {6/38:91} B:0 3.84088 [ 2.32083] ((37 . 1) (40 . 2) (41 . 3) (42 . 4) (43 . 6) (44 . 7) (45 . 9) (47 . 10) (50 . 11) (51 . 12) (52 . 13) (55 . 14) (56 . 15) (57 . 17)) 5.127 {8/35:91} B:0 3.84090 [ 2.32090] ((34 . 1) (40 . 2) (41 . 3) (42 . 4) (43 . 6) (44 . 7) (45 . 9) (47 . 10) (50 . 11) (51 . 12) (52 . 13) (53 . 14) (56 . 15) (57 . 17)) 5.513 {8/35:91} B:0 SIMILARITY (1/min{score1}): 0.2943 [and 1/min{score2}: 0.8731] [776, 3181]: Comparing 1dab_A and 1k5c_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 39 (3 H + 36 S) secondary structure elements in 1k5c_A, of which 35 satisfy the size requirements. 1.62984 [ 1.10937] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 12) (12 . 13) (13 . 14) (14 . 15) (15 . 16) (17 . 19) (18 . 20) (19 . 21) (20 . 22) (21 . 23) (22 . 24) (23 . 25) (24 . 26) (25 . 27) (26 . 28) (27 . 29) (28 . 30) (29 . 31) (30 . 32) (31 . 33) (32 . 34) (33 . 36) (34 . 37) (36 . 39)) 3.811 {14/263:496} B:0 1.68460 [ 1.15204] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7) (11 . 8) (12 . 9) (13 . 10) (14 . 12) (15 . 13) (17 . 15) (18 . 16) (19 . 17) (20 . 19) (21 . 20) (22 . 21) (23 . 22) (24 . 23) (25 . 24) (26 . 25) (27 . 26) (28 . 27) (29 . 28) (30 . 29) (31 . 30) (32 . 31) (33 . 32) (34 . 33) (35 . 34) (36 . 36) (39 . 39)) 3.646 {15/248:465} B:0 1.83008 [ 1.48969] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (13 . 16) (14 . 17) (15 . 19) (17 . 21) (18 . 22) (19 . 23) (20 . 24) (21 . 25) (22 . 26) (23 . 27) (25 . 29) (26 . 30) (27 . 31) (28 . 32) (29 . 33) (30 . 34) (31 . 36) (32 . 37) (34 . 39)) 4.847 {33/245:465} B:0 1.92342 [ 1.68936] ((4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 19) (19 . 20) (20 . 21) (21 . 22) (22 . 23) (23 . 24) (24 . 25) (25 . 26) (26 . 27) (27 . 28) (28 . 29) (29 . 30) (30 . 31) (31 . 32) (32 . 33) (33 . 34) (34 . 36) (35 . 37) (37 . 39)) 4.817 {42/261:496} B:0 1.74289 [ 1.19707] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7) (11 . 8) (12 . 9) (13 . 10) (14 . 12) (15 . 13) (17 . 15) (18 . 16) (19 . 17) (20 . 19) (21 . 20) (22 . 21) (23 . 22) (24 . 23) (25 . 24) (26 . 25) (27 . 26) (28 . 27) (29 . 28) (30 . 29) (31 . 30) (32 . 31) (33 . 32) (36 . 36) (37 . 34) (39 . 39)) 3.819 {15/225:435} B:1 SIMILARITY (1/min{score1}): 0.6294 [and 1/min{score2}: 0.9076] [776, 3209]: Comparing 1dab_A and 1k8f_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 16 (0 H + 16 S) secondary structure elements in 1k8f_A, of which 16 satisfy the size requirements. 3.72780 [ 1.45576] ((6 . 1) (9 . 2) (11 . 3) (12 . 4) (14 . 5) (15 . 6) (17 . 7) (18 . 8) (19 . 9) (21 . 10) (22 . 11) (24 . 12) (25 . 13) (26 . 14)) 5.423 {4/31:91} B:0 3.75928 [ 1.82516] ((34 . 1) (37 . 2) (39 . 3) (40 . 4) (41 . 5) (42 . 6) (43 . 7) (44 . 8) (45 . 9) (47 . 10) (50 . 11) (51 . 12) (52 . 13) (57 . 14)) 5.308 {7/40:91} B:0 3.77698 [ 1.96425] ((2 . 1) (6 . 2) (8 . 3) (9 . 4) (11 . 5) (12 . 6) (14 . 7) (15 . 8) (17 . 9) (18 . 10) (20 . 11) (21 . 12) (24 . 13) (27 . 14)) 5.780 {4/21:91} B:0 3.87450 [ 2.46184] ((37 . 1) (40 . 2) (41 . 3) (42 . 4) (43 . 5) (44 . 6) (45 . 7) (47 . 8) (50 . 9) (51 . 10) (52 . 11) (55 . 12) (56 . 13) (57 . 14)) 5.867 {9/37:91} B:0 3.95105 [ 2.72421] ((8 . 1) (12 . 2) (14 . 3) (15 . 4) (17 . 5) (18 . 6) (20 . 7) (21 . 8) (22 . 9) (24 . 10) (25 . 11) (27 . 12) (28 . 13) (31 . 14)) 5.349 {10/37:91} B:0 SIMILARITY (1/min{score1}): 0.2947 [and 1/min{score2}: 0.7127] [776, 3243]: Comparing 1dab_A and 1kap_P, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 39 (13 H + 26 S) secondary structure elements in 1kap_P, of which 17 satisfy the size requirements. 3.25020 [ 1.06819] ((31 . 19) (34 . 23) (36 . 17) (39 . 20) (40 . 21) (41 . 24) (42 . 25) (43 . 26) (44 . 27) (46 . 28) (47 . 29) (50 . 31) (51 . 32) (52 . 37) (56 . 35) (57 . 36)) 5.333 {2/57:120} B:2 4.06955 [ 3.57848] ((34 . 17) (36 . 19) (39 . 23) (40 . 20) (41 . 21) (42 . 24) (43 . 25) (44 . 26) (45 . 27) (47 . 28) (50 . 29) (51 . 31) (52 . 32) (53 . 37) (56 . 35) (57 . 36)) 5.583 {20/56:120} B:2 3.25008 [ 1.06467] ((35 . 19) (36 . 17) (37 . 23) (39 . 20) (40 . 21) (41 . 24) (42 . 25) (43 . 26) (44 . 27) (46 . 28) (47 . 29) (50 . 31) (51 . 32) (52 . 37) (56 . 35) (57 . 36)) 5.020 {1/60:120} B:3 3.25010 [ 1.06536] ((31 . 19) (34 . 23) (36 . 17) (39 . 20) (40 . 21) (41 . 24) (42 . 25) (43 . 26) (44 . 27) (46 . 28) (50 . 31) (51 . 29) (52 . 37) (53 . 32) (56 . 35) (57 . 36)) 5.393 {1/58:120} B:3 3.31696 [ 1.81100] ((23 . 19) (26 . 23) (27 . 17) (30 . 20) (32 . 21) (33 . 24) (35 . 25) (36 . 26) (37 . 27) (39 . 28) (40 . 29) (41 . 31) (42 . 32) (43 . 37) (46 . 36) (50 . 35)) 4.903 {10/57:120} B:3 SIMILARITY (1/min{score1}): 0.3077 [and 1/min{score2}: 0.9393] [776, 4547]: Comparing 1dab_A and 1o88_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 34 (8 H + 26 S) secondary structure elements in 1o88_A, of which 27 satisfy the size requirements. 2.26090 [ 1.17410] ((9 . 1) (12 . 3) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 12) (21 . 13) (22 . 14) (23 . 16) (24 . 17) (25 . 18) (27 . 20) (28 . 21) (29 . 22) (30 . 23) (31 . 24) (32 . 25) (33 . 26) (34 . 27) (35 . 28) (36 . 29)) 2.982 {1/131:253} B:0 2.26090 [ 1.17413] ((9 . 1) (12 . 3) (14 . 6) (15 . 7) (17 . 8) (18 . 9) (19 . 10) (20 . 12) (21 . 13) (22 . 14) (23 . 16) (24 . 17) (25 . 18) (27 . 20) (28 . 21) (29 . 22) (30 . 23) (31 . 24) (32 . 25) (33 . 26) (34 . 27) (35 . 28) (39 . 29)) 3.074 {1/132:253} B:0 2.62929 [ 2.08361] ((1 . 1) (4 . 6) (5 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 12) (11 . 13) (12 . 14) (13 . 16) (14 . 17) (15 . 18) (17 . 20) (18 . 21) (19 . 22) (20 . 23) (21 . 24) (22 . 25) (23 . 26) (24 . 27) (25 . 28) (26 . 29)) 5.141 {23/114:231} B:0 2.78453 [ 2.24177] ((19 . 1) (20 . 3) (22 . 6) (23 . 7) (25 . 8) (26 . 9) (27 . 10) (28 . 12) (29 . 13) (30 . 14) (31 . 16) (32 . 17) (33 . 18) (35 . 20) (36 . 21) (37 . 22) (39 . 24) (40 . 25) (41 . 27) (42 . 28) (45 . 29)) 5.256 {22/101:210} B:0 3.51557 [ 2.08288] ((1 . 13) (2 . 14) (3 . 16) (4 . 17) (5 . 18) (7 . 20) (8 . 21) (9 . 22) (10 . 23) (11 . 24) (12 . 25) (13 . 26) (14 . 27) (15 . 28) (19 . 29)) 4.919 {9/53:105} B:0 SIMILARITY (1/min{score1}): 0.4423 [and 1/min{score2}: 0.8517] [776, 4629]: Comparing 1dab_A and 1ofd_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 120 (69 H + 51 S) secondary structure elements in 1ofd_A, of which 16 satisfy the size requirements. 5.20743 [ 1.81035] ((33 . 105) (36 . 107) (39 . 108) (41 . 109) (43 . 111) (46 . 112) (51 . 113) (52 . 114) (56 . 116) (57 . 120)) 6.196 {3/21:45} B:0 5.50054 [ 3.71665] ((24 . 105) (27 . 107) (29 . 108) (30 . 109) (33 . 111) (36 . 112) (39 . 113) (41 . 114) (43 . 116) (46 . 120)) 6.137 {7/19:45} B:0 5.77779 [ 1.77812] ((15 . 105) (18 . 107) (21 . 108) (24 . 109) (27 . 111) (30 . 112) (33 . 113) (35 . 114) (37 . 120)) 4.754 {0/6:36} B:0 5.77779 [ 1.77820] ((6 . 105) (9 . 107) (12 . 108) (15 . 109) (18 . 111) (21 . 112) (23 . 113) (26 . 114) (29 . 120)) 4.993 {0/2:36} B:0 5.83356 [ 4.56286] ((33 . 105) (36 . 107) (39 . 108) (41 . 109) (43 . 111) (44 . 112) (47 . 113) (51 . 114) (56 . 116) (57 . 120)) 6.281 {10/22:45} B:0 SIMILARITY (1/min{score1}): 0.1923 [and 1/min{score2}: 0.6249] [776, 4630]: Comparing 1dab_A and 1ofm_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 46 (7 H + 39 S) secondary structure elements in 1ofm_A, of which 41 satisfy the size requirements. 1.48591 [ 1.17183] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7) (11 . 8) (12 . 9) (13 . 10) (14 . 11) (15 . 12) (17 . 14) (18 . 15) (19 . 16) (20 . 17) (21 . 18) (22 . 19) (23 . 20) (24 . 21) (25 . 22) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (30 . 27) (31 . 28) (32 . 29) (33 . 30) (34 . 31) (35 . 33) (36 . 34) (37 . 36) (39 . 38) (40 . 39) (41 . 41) (42 . 42)) 3.093 {6/322:595} B:0 1.74588 [ 1.39183] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (5 . 13) (6 . 14) (7 . 15) (8 . 16) (9 . 17) (10 . 18) (11 . 19) (12 . 20) (13 . 21) (14 . 22) (15 . 23) (17 . 25) (18 . 26) (19 . 27) (20 . 28) (21 . 29) (22 . 30) (23 . 31) (24 . 33) (25 . 34) (26 . 35) (27 . 36) (28 . 38) (29 . 39) (31 . 41) (32 . 42)) 3.980 {15/210:435} B:0 1.75571 [ 1.46804] ((17 . 3) (18 . 4) (19 . 5) (20 . 6) (21 . 7) (22 . 8) (23 . 9) (24 . 10) (25 . 11) (26 . 12) (27 . 13) (28 . 14) (29 . 15) (30 . 16) (31 . 17) (32 . 18) (33 . 19) (34 . 20) (35 . 21) (36 . 22) (37 . 23) (39 . 25) (40 . 26) (41 . 28) (42 . 29) (43 . 31) (44 . 33) (45 . 34) (46 . 35) (47 . 36) (50 . 39)) 4.313 {25/223:465} B:0 1.48585 [ 1.17171] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 24) (25 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 33) (33 . 34) (34 . 35) (35 . 36) (36 . 38) (40 . 42) (41 . 41)) 2.981 {5/323:595} B:1 1.49926 [ 1.19849] ((4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (12 . 11) (13 . 12) (14 . 13) (15 . 14) (17 . 16) (18 . 17) (19 . 18) (20 . 19) (21 . 20) (22 . 21) (23 . 22) (24 . 23) (25 . 24) (26 . 25) (27 . 26) (28 . 27) (29 . 28) (30 . 29) (31 . 30) (32 . 31) (33 . 33) (34 . 34) (35 . 35) (36 . 36) (37 . 39) (40 . 38) (42 . 41)) 4.173 {20/309:595} B:1 SIMILARITY (1/min{score1}): 0.7102 [and 1/min{score2}: 0.8980] [776, 4644]: Comparing 1dab_A and 1ogm_X, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 54 (6 H + 48 S) secondary structure elements in 1ogm_X, of which 28 satisfy the size requirements. 2.26933 [ 1.26859] ((2 . 22) (5 . 24) (8 . 27) (9 . 29) (10 . 30) (11 . 31) (12 . 32) (13 . 33) (14 . 34) (15 . 35) (17 . 37) (20 . 38) (23 . 40) (25 . 42) (26 . 43) (27 . 44) (28 . 45) (30 . 46) (31 . 47) (32 . 48) (33 . 49) (35 . 50) (36 . 52)) 5.607 {8/102:253} B:0 2.32976 [ 1.96159] ((1 . 22) (2 . 24) (3 . 25) (5 . 27) (6 . 28) (7 . 29) (8 . 30) (9 . 31) (10 . 32) (11 . 33) (12 . 34) (13 . 35) (14 . 36) (15 . 37) (18 . 38) (21 . 40) (23 . 42) (24 . 43) (25 . 44) (26 . 45) (28 . 46) (29 . 47) (30 . 48) (31 . 49) (33 . 50) (34 . 52)) 5.633 {27/141:325} B:0 2.37004 [ 2.02746] ((1 . 22) (2 . 24) (3 . 25) (5 . 27) (6 . 28) (7 . 29) (8 . 30) (9 . 31) (10 . 32) (11 . 33) (12 . 34) (13 . 35) (14 . 36) (15 . 37) (18 . 38) (21 . 40) (23 . 42) (24 . 43) (25 . 44) (26 . 45) (28 . 46) (29 . 47) (30 . 48) (31 . 49) (32 . 50) (34 . 52)) 5.805 {27/136:325} B:0 2.01493 [ 1.16282] ((3 . 22) (4 . 23) (6 . 24) (7 . 25) (9 . 27) (10 . 28) (11 . 29) (12 . 30) (13 . 31) (14 . 32) (15 . 33) (17 . 35) (18 . 37) (19 . 34) (21 . 36) (22 . 38) (24 . 40) (27 . 42) (28 . 43) (29 . 44) (30 . 45) (32 . 46) (33 . 48) (35 . 49) (36 . 50) (37 . 52)) 5.632 {11/133:325} B:1 2.08198 [ 1.42591] ((10 . 22) (13 . 24) (17 . 25) (19 . 27) (20 . 28) (21 . 29) (22 . 30) (23 . 31) (24 . 32) (25 . 33) (26 . 34) (27 . 35) (28 . 36) (29 . 37) (31 . 38) (32 . 40) (34 . 42) (35 . 43) (37 . 48) (39 . 44) (40 . 45) (41 . 46) (42 . 47) (43 . 49) (44 . 50) (46 . 52)) 5.775 {20/155:325} B:1 SIMILARITY (1/min{score1}): 0.5189 [and 1/min{score2}: 0.9566] [776, 4990]: Comparing 1dab_A and 1pe9_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 41 (9 H + 32 S) secondary structure elements in 1pe9_A, of which 32 satisfy the size requirements. 2.42996 [ 1.68857] ((14 . 3) (17 . 5) (18 . 6) (19 . 8) (20 . 9) (21 . 10) (22 . 11) (23 . 13) (24 . 14) (25 . 17) (26 . 18) (27 . 19) (28 . 23) (29 . 24) (30 . 25) (31 . 26) (32 . 28) (33 . 29) (35 . 31) (36 . 32) (39 . 35) (40 . 37)) 4.155 {17/123:231} B:0 4.33334 [ 2.66668] ((1 . 6) (3 . 9) (4 . 10) (5 . 11) (6 . 13) (7 . 14) (8 . 17) (9 . 18) (17 . 26) (18 . 28) (19 . 29) (24 . 34)) 2.942 {0/37:66} B:0 4.33334 [ 2.66668] ((1 . 6) (3 . 9) (4 . 10) (5 . 11) (6 . 13) (14 . 23) (15 . 24) (17 . 26) (18 . 28) (19 . 29) (21 . 31) (24 . 34)) 3.074 {0/38:66} B:0 4.72728 [ 2.90910] ((3 . 5) (4 . 6) (8 . 11) (9 . 13) (17 . 23) (18 . 24) (19 . 25) (20 . 26) (21 . 28) (22 . 29) (24 . 31)) 3.044 {0/33:55} B:0 4.72728 [ 2.90910] ((1 . 6) (3 . 9) (4 . 10) (6 . 13) (7 . 14) (14 . 23) (15 . 24) (17 . 26) (18 . 28) (19 . 29) (24 . 34)) 3.044 {0/31:55} B:0 SIMILARITY (1/min{score1}): 0.4803 [and 1/min{score2}: 0.7764] [776, 5288]: Comparing 1dab_A and 1qcx_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 36 (7 H + 29 S) secondary structure elements in 1qcx_A, of which 32 satisfy the size requirements. 2.28956 [ 1.50266] ((14 . 3) (15 . 4) (17 . 11) (18 . 12) (19 . 13) (20 . 14) (21 . 15) (22 . 17) (23 . 18) (24 . 19) (25 . 20) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (30 . 25) (32 . 27) (33 . 28) (34 . 29) (35 . 30) (36 . 31) (37 . 32) (39 . 34)) 4.531 {14/130:253} B:0 2.37412 [ 1.49785] ((14 . 3) (15 . 4) (17 . 11) (18 . 12) (19 . 13) (20 . 14) (21 . 15) (22 . 17) (23 . 18) (24 . 19) (25 . 20) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (30 . 25) (32 . 27) (33 . 28) (34 . 29) (35 . 30) (36 . 31) (39 . 34)) 4.259 {10/116:231} B:0 2.48226 [ 1.54930] ((17 . 3) (18 . 4) (20 . 11) (21 . 12) (22 . 13) (23 . 14) (24 . 15) (25 . 17) (26 . 18) (27 . 19) (28 . 20) (29 . 21) (30 . 22) (31 . 23) (32 . 24) (33 . 25) (35 . 27) (36 . 28) (37 . 29) (39 . 31) (41 . 34)) 4.439 {8/103:210} B:0 2.62525 [ 1.70015] ((20 . 3) (21 . 4) (23 . 11) (24 . 12) (25 . 13) (26 . 14) (27 . 15) (28 . 17) (29 . 18) (30 . 19) (31 . 20) (32 . 21) (33 . 22) (34 . 23) (35 . 24) (36 . 25) (39 . 28) (40 . 29) (41 . 31) (43 . 34)) 4.021 {11/95:190} B:0 4.00001 [ 2.46157] ((1 . 15) (2 . 17) (3 . 18) (4 . 19) (5 . 20) (7 . 22) (8 . 23) (9 . 24) (10 . 25) (12 . 27) (14 . 29) (15 . 30) (18 . 32)) 2.432 {1/50:78} B:0 SIMILARITY (1/min{score1}): 0.4423 [and 1/min{score2}: 0.7186] [776, 5359]: Comparing 1dab_A and 1qjv_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 35 (6 H + 29 S) secondary structure elements in 1qjv_A, of which 33 satisfy the size requirements. 2.36405 [ 1.50160] ((15 . 1) (18 . 3) (19 . 4) (20 . 5) (21 . 6) (22 . 7) (23 . 9) (25 . 10) (26 . 12) (27 . 13) (28 . 14) (29 . 15) (30 . 16) (31 . 17) (32 . 18) (33 . 19) (34 . 20) (35 . 21) (36 . 22) (37 . 24) (39 . 27) (41 . 33)) 3.221 {5/133:231} B:0 2.17180 [ 1.39472] ((12 . 1) (13 . 4) (15 . 3) (17 . 5) (18 . 6) (19 . 7) (20 . 9) (22 . 10) (23 . 12) (24 . 13) (25 . 14) (26 . 15) (27 . 16) (28 . 17) (29 . 18) (30 . 19) (31 . 20) (32 . 21) (33 . 22) (34 . 23) (35 . 24) (36 . 27) (37 . 29) (39 . 33)) 3.408 {11/163:276} B:1 2.27807 [ 1.49847] ((10 . 1) (13 . 3) (15 . 5) (17 . 7) (18 . 9) (19 . 6) (20 . 10) (21 . 12) (22 . 13) (23 . 14) (24 . 15) (25 . 16) (26 . 17) (27 . 18) (28 . 19) (29 . 20) (30 . 21) (31 . 22) (32 . 23) (33 . 24) (34 . 27) (36 . 29) (40 . 33)) 3.858 {14/148:253} B:1 2.30688 [ 1.59244] ((17 . 1) (20 . 3) (21 . 4) (22 . 5) (23 . 6) (24 . 7) (25 . 9) (27 . 10) (28 . 12) (29 . 13) (30 . 14) (31 . 15) (32 . 16) (33 . 17) (34 . 18) (35 . 19) (36 . 20) (37 . 22) (39 . 23) (40 . 21) (42 . 24) (44 . 29) (45 . 33)) 4.226 {18/148:253} B:1 2.32058 [ 1.63290] ((14 . 1) (17 . 3) (18 . 4) (19 . 5) (20 . 6) (21 . 7) (22 . 9) (24 . 10) (25 . 12) (26 . 13) (27 . 14) (28 . 15) (29 . 16) (30 . 17) (31 . 18) (32 . 19) (33 . 20) (34 . 21) (35 . 22) (36 . 23) (37 . 27) (40 . 24) (42 . 29)) 3.901 {19/146:253} B:1 SIMILARITY (1/min{score1}): 0.4610 [and 1/min{score2}: 0.7221] [776, 5679]: Comparing 1dab_A and 1rmg, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 45 (4 H + 41 S) secondary structure elements in 1rmg, of which 41 satisfy the size requirements. 2.17540 [ 2.07708] ((1 . 5) (3 . 7) (4 . 8) (5 . 9) (6 . 10) (7 . 12) (8 . 13) (9 . 15) (10 . 17) (11 . 18) (12 . 19) (13 . 21) (14 . 22) (15 . 23) (17 . 25) (18 . 26) (19 . 28) (20 . 29) (21 . 30) (22 . 32) (23 . 33) (24 . 34) (25 . 35) (26 . 36) (27 . 37) (28 . 38) (29 . 39) (30 . 40) (31 . 41) (32 . 42) (33 . 43) (34 . 44) (36 . 45)) 4.695 {58/289:528} B:0 2.49356 [ 2.43758] ((1 . 2) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (7 . 10) (8 . 12) (9 . 13) (10 . 15) (11 . 17) (12 . 18) (13 . 19) (14 . 21) (15 . 22) (17 . 24) (18 . 25) (19 . 26) (20 . 28) (21 . 29) (22 . 30) (23 . 32) (24 . 33) (25 . 34) (26 . 35) (27 . 36) (28 . 37) (29 . 38) (30 . 39) (31 . 40) (32 . 41) (33 . 42) (34 . 43) (35 . 44) (40 . 45)) 5.377 {72/300:561} B:0 2.51706 [ 2.46883] ((1 . 2) (2 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (7 . 10) (8 . 12) (9 . 13) (10 . 15) (11 . 17) (12 . 18) (13 . 19) (14 . 21) (15 . 22) (17 . 24) (18 . 25) (19 . 26) (20 . 28) (21 . 29) (22 . 30) (23 . 32) (24 . 33) (25 . 34) (26 . 35) (27 . 36) (28 . 37) (29 . 38) (30 . 39) (31 . 40) (32 . 41) (33 . 42) (34 . 43) (35 . 44) (40 . 45)) 5.379 {77/316:595} B:0 2.70608 [ 2.64260] ((1 . 8) (2 . 10) (3 . 7) (4 . 12) (5 . 13) (6 . 15) (7 . 17) (8 . 18) (9 . 19) (10 . 21) (11 . 22) (12 . 23) (13 . 24) (14 . 25) (15 . 26) (17 . 29) (18 . 30) (19 . 32) (20 . 33) (21 . 34) (22 . 35) (23 . 36) (24 . 37) (25 . 38) (26 . 39) (27 . 40) (28 . 41) (29 . 42) (30 . 43) (31 . 44) (33 . 45)) 4.972 {65/250:465} B:1 1.70511 [ 1.50248] ((2 . 5) (3 . 2) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 12) (10 . 13) (11 . 15) (12 . 17) (13 . 18) (14 . 19) (15 . 21) (17 . 23) (18 . 24) (19 . 25) (20 . 26) (21 . 28) (22 . 29) (23 . 30) (24 . 32) (25 . 33) (26 . 34) (27 . 35) (28 . 36) (29 . 37) (30 . 38) (31 . 39) (33 . 41) (34 . 42) (35 . 43) (36 . 40) (39 . 45)) 4.831 {39/297:561} B:2 SIMILARITY (1/min{score1}): 0.7022 [and 1/min{score2}: 0.8734] [776, 5706]: Comparing 1dab_A and 1ru4_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 36 (4 H + 32 S) secondary structure elements in 1ru4_A, of which 32 satisfy the size requirements. 2.02749 [ 1.60936] ((4 . 1) (7 . 3) (9 . 5) (10 . 6) (11 . 8) (12 . 9) (13 . 10) (14 . 11) (15 . 12) (17 . 14) (18 . 15) (19 . 16) (20 . 17) (21 . 18) (22 . 19) (23 . 20) (25 . 22) (26 . 23) (28 . 25) (29 . 26) (30 . 27) (31 . 28) (32 . 29) (33 . 30) (34 . 31) (35 . 32) (37 . 33) (40 . 34)) 3.647 {32/214:378} B:0 2.23933 [ 1.91189] ((19 . 1) (20 . 3) (21 . 4) (22 . 5) (23 . 6) (24 . 8) (25 . 9) (26 . 10) (27 . 11) (28 . 12) (29 . 13) (30 . 14) (31 . 15) (32 . 16) (33 . 17) (34 . 18) (35 . 19) (36 . 20) (39 . 23) (41 . 26) (42 . 27) (43 . 29) (44 . 30) (45 . 31) (46 . 32) (47 . 33) (50 . 34)) 4.641 {36/196:351} B:0 2.26157 [ 1.99908] ((19 . 1) (20 . 3) (21 . 4) (22 . 5) (23 . 6) (24 . 8) (25 . 9) (26 . 10) (27 . 11) (28 . 12) (29 . 13) (30 . 14) (31 . 15) (32 . 16) (33 . 17) (34 . 18) (35 . 19) (36 . 20) (37 . 22) (39 . 23) (41 . 26) (42 . 27) (43 . 29) (44 . 30) (45 . 31) (46 . 32) (47 . 33) (50 . 34)) 4.858 {41/211:378} B:0 4.33335 [ 2.66676] ((1 . 11) (2 . 12) (3 . 13) (8 . 18) (9 . 19) (15 . 25) (18 . 28) (19 . 29) (20 . 30) (21 . 31) (23 . 33) (24 . 34)) 2.779 {1/36:66} B:0 4.33360 [ 2.66780] ((7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (14 . 15) (15 . 16) (17 . 18) (18 . 19) (19 . 20) (21 . 22) (26 . 30)) 2.649 {2/37:66} B:0 SIMILARITY (1/min{score1}): 0.5764 [and 1/min{score2}: 0.9314] [776, 5714]: Comparing 1dab_A and 1rwr_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 34 (0 H + 34 S) secondary structure elements in 1rwr_A, of which 30 satisfy the size requirements. 2.74506 [ 2.51702] ((1 . 2) (4 . 3) (5 . 4) (7 . 5) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 17) (17 . 19) (18 . 20) (20 . 24) (21 . 22) (23 . 27) (24 . 25) (25 . 29) (26 . 30) (27 . 28) (28 . 31) (29 . 32) (31 . 33) (32 . 34)) 5.321 {38/153:300} B:3 2.13907 [ 1.43936] ((1 . 7) (2 . 2) (4 . 3) (7 . 5) (8 . 4) (10 . 10) (11 . 8) (12 . 9) (13 . 13) (14 . 11) (15 . 12) (17 . 14) (18 . 17) (20 . 19) (21 . 20) (23 . 22) (24 . 25) (26 . 27) (27 . 28) (28 . 29) (29 . 30) (31 . 31) (32 . 32) (34 . 33) (35 . 34)) 4.587 {20/164:300} B:4 2.23719 [ 1.52819] ((11 . 2) (13 . 4) (15 . 3) (18 . 5) (19 . 8) (20 . 9) (21 . 10) (22 . 11) (23 . 12) (24 . 13) (25 . 14) (28 . 23) (29 . 17) (31 . 19) (32 . 20) (34 . 22) (35 . 25) (37 . 30) (39 . 29) (40 . 27) (41 . 31) (42 . 32) (43 . 33) (44 . 34)) 5.608 {20/152:276} B:4 2.73600 [ 2.59659] ((7 . 2) (8 . 3) (9 . 4) (11 . 5) (12 . 8) (13 . 9) (14 . 10) (15 . 15) (17 . 14) (18 . 11) (19 . 12) (20 . 13) (21 . 16) (22 . 17) (23 . 19) (24 . 23) (25 . 20) (27 . 22) (28 . 25) (29 . 27) (30 . 24) (31 . 28) (32 . 29) (33 . 30) (35 . 31) (36 . 32) (37 . 33) (39 . 34)) 5.723 {50/194:378} B:4 2.25493 [ 1.92109] ((1 . 2) (2 . 3) (3 . 4) (5 . 5) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13) (12 . 14) (13 . 17) (14 . 19) (15 . 16) (17 . 22) (18 . 23) (19 . 20) (21 . 24) (22 . 25) (23 . 29) (24 . 27) (25 . 28) (26 . 31) (27 . 30) (29 . 33) (30 . 32) (33 . 34)) 5.467 {33/177:351} B:5 SIMILARITY (1/min{score1}): 0.4952 [and 1/min{score2}: 0.8032] [776, 5940]: Comparing 1dab_A and 1tyv, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 55 (11 H + 44 S) secondary structure elements in 1tyv, of which 43 satisfy the size requirements. 1.70357 [ 1.43219] ((2 . 2) (5 . 5) (6 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 12) (12 . 19) (13 . 20) (14 . 21) (15 . 22) (17 . 23) (18 . 24) (20 . 25) (21 . 26) (22 . 27) (23 . 28) (24 . 29) (26 . 32) (27 . 33) (29 . 34) (30 . 35) (32 . 36) (33 . 37) (35 . 38) (36 . 39) (37 . 40) (39 . 41) (40 . 42) (42 . 44) (43 . 47)) 6.789 {17/205:465} B:0 1.81157 [ 1.56275] ((3 . 7) (4 . 8) (5 . 9) (6 . 10) (7 . 11) (8 . 12) (9 . 19) (10 . 20) (11 . 21) (12 . 22) (14 . 23) (15 . 24) (17 . 25) (18 . 26) (19 . 27) (20 . 28) (21 . 29) (23 . 32) (24 . 33) (26 . 34) (27 . 35) (29 . 36) (30 . 37) (32 . 38) (33 . 39) (35 . 40) (36 . 41) (37 . 42) (39 . 44) (43 . 45)) 4.983 {21/183:435} B:0 1.92869 [ 1.59746] ((2 . 5) (3 . 7) (5 . 9) (6 . 10) (8 . 12) (9 . 19) (11 . 20) (12 . 22) (14 . 23) (15 . 24) (17 . 25) (18 . 26) (19 . 27) (20 . 28) (21 . 29) (23 . 32) (24 . 33) (26 . 34) (27 . 35) (29 . 36) (30 . 37) (32 . 38) (33 . 39) (35 . 40) (36 . 41) (37 . 42) (44 . 44)) 4.589 {7/135:351} B:0 1.94504 [ 1.62584] ((2 . 5) (6 . 7) (8 . 9) (9 . 10) (11 . 11) (12 . 19) (14 . 20) (15 . 22) (17 . 23) (18 . 24) (20 . 25) (21 . 26) (22 . 27) (23 . 28) (24 . 29) (26 . 32) (27 . 33) (29 . 34) (30 . 35) (32 . 36) (33 . 37) (35 . 38) (36 . 39) (37 . 40) (39 . 41) (40 . 42) (42 . 44)) 4.903 {11/128:351} B:0 2.05650 [ 1.87585] ((17 . 5) (19 . 7) (20 . 8) (21 . 9) (22 . 10) (23 . 11) (24 . 12) (25 . 19) (26 . 20) (27 . 21) (28 . 22) (30 . 23) (31 . 24) (33 . 25) (34 . 26) (35 . 27) (36 . 28) (39 . 32) (40 . 33) (41 . 34) (42 . 35) (43 . 36) (44 . 37) (46 . 38) (47 . 39) (50 . 40) (51 . 41) (52 . 42) (57 . 44)) 4.664 {29/175:406} B:0 SIMILARITY (1/min{score1}): 0.5870 [and 1/min{score2}: 0.6982] [776, 6229]: Comparing 1dab_A and 1vh4_A, based on their crossing files. There are 58 (3 H + 55 S) secondary structure elements in 1dab_A, of which 52 satisfy the size requirements. There are 29 (9 H + 20 S) secondary structure elements in 1vh4_A, of which 26 satisfy the size requirements. 3.05897 [ 1.53054] ((2 . 6) (3 . 11) (5 . 12) (6 . 13) (8 . 14) (9 . 15) (11 . 16) (12 . 17) (14 . 18) (15 . 19) (17 . 20) (18 . 21) (20 . 22) (21 . 23) (23 . 24) (24 . 25) (26 . 26)) 5.710 {0/18:136} B:0 3.25017 [ 1.62639] ((2 . 11) (3 . 12) (5 . 13) (6 . 14) (8 . 15) (9 . 16) (11 . 17) (12 . 18) (14 . 19) (15 . 20) (17 . 21) (18 . 22) (20 . 23) (21 . 24) (23 . 25) (24 . 26)) 6.289 {0/12:120} B:0 3.28006 [ 1.82769] ((1 . 11) (2 . 12) (3 . 13) (5 . 14) (6 . 15) (8 . 16) (9 . 17) (11 . 18) (12 . 19) (14 . 20) (15 . 21) (17 . 22) (18 . 23) (20 . 24) (21 . 25) (24 . 26)) 6.078 {3/21:120} B:0 3.46676 [ 1.73405] ((2 . 12) (3 . 13) (5 . 14) (6 . 15) (8 . 16) (9 . 17) (11 . 18) (12 . 19) (14 . 20) (15 . 21) (17 . 22) (18 . 23) (20 . 24) (21 . 25) (23 . 26)) 5.588 {0/8:105} B:0 3.55903 [ 2.23708] ((2 . 12) (3 . 13) (5 . 14) (6 . 15) (8 . 16) (9 . 17) (11 . 18) (12 . 19) (14 . 20) (15 . 21) (17 . 22) (18 . 23) (20 . 24) (21 . 25) (24 . 26)) 5.917 {2/10:105} B:0 SIMILARITY (1/min{score1}): 0.3461 [and 1/min{score2}: 0.6910] -------------------------------------------------------------------------------------------------------------------------