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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5940 1tyv  )  (  386 1bhe  )     0.5532   0.7096   5.9889 (   6   78  276)   1     0.6802   0.8754   43  33
( 5940 1tyv  )  (  429 1bn8_A)     0.4398   0.5850   5.3429 (   7   84  171)   0     0.4872   0.6243   43  32
( 5940 1tyv  )  (  776 1dab_A)     0.6909   0.5839   5.7472 (  18  199  465)   0     0.6909   0.5839   43  52
( 5940 1tyv  )  ( 1119 1ee6_A)     0.3720   0.7596   4.4634 (   2   48  120)   0     0.4338   0.8472   43  21
( 5940 1tyv  )  ( 1324 1ezg_A)     0.1395   0.9999   2.1721 (   0    0   15)   0     0.1395   0.9999   43   6
( 5940 1tyv  )  ( 1913 1gq8_A)     0.4383   0.6706   4.2192 (   8   83  171)   0     0.4846   0.7427   43  27
( 5940 1tyv  )  ( 2132 1h80_A)     0.3670   0.3902   6.2711 (  20   83  190)   2     0.6090   0.7229   43  35
( 5940 1tyv  )  ( 2196 1hf2_A)     0.2313   0.5819   4.8447 (   1    6   45)   0     0.2326   0.9995   43  10
( 5940 1tyv  )  ( 2208 1hg8_A)     0.3953   0.4134   5.4622 (  28  119  276)   0     0.6481   0.8371   43  33
( 5940 1tyv  )  ( 3179 1k4z_A)     0.3022   0.7987   5.0515 (   1   16   78)   0     0.3419   0.8116   43  16
( 5940 1tyv  )  ( 3181 1k5c_A)     0.3981   0.4174   5.4163 (  22   96  253)   0     0.6726   0.8236   43  35
( 5940 1tyv  )  ( 3209 1k8f_A)     0.3008   0.6778   3.7762 (   1    8   78)   0     0.3229   0.7971   43  16
( 5940 1tyv  )  ( 3243 1kap_P)     0.3173   0.5386   4.7908 (   3   17   91)   1     0.3717   0.9072   43  17
( 5940 1tyv  )  ( 4547 1o88_A)     0.4300   0.6129   5.2589 (   5   38  171)   0     0.4641   0.6665   43  27
( 5940 1tyv  )  ( 4629 1ofd_A)     0.2093   0.5622   6.1825 (   0   13   36)   0     0.2529   0.6206   43  16
( 5940 1tyv  )  ( 4630 1ofm_A)     0.6687   0.7000   4.0605 (  10  157  406)   0     0.6866   0.7178   43  41
( 5940 1tyv  )  ( 4644 1ogm_X)     0.1654   0.1664   5.9091 (   6   10  136)   0     0.5805   0.8157   43  28
( 5940 1tyv  )  ( 4990 1pe9_A)     0.4397   0.5845   5.3994 (   6   71  171)   0     0.5149   0.6457   43  32
( 5940 1tyv  )  ( 5288 1qcx_A)     0.3720   0.4995   5.0710 (   1   21  120)   0     0.4593   0.6012   43  32
( 5940 1tyv  )  ( 5359 1qjv_A)     0.4637   0.6010   4.6227 (   6   85  190)   1     0.4864   0.6290   43  33
( 5940 1tyv  )  ( 5679 1rmg  )     0.6721   0.6999   5.0593 (  17  188  435)   1     0.6957   0.7292   43  41
( 5940 1tyv  )  ( 5706 1ru4_A)     0.5564   0.7426   4.7279 (   7  119  276)   0     0.5961   0.7777   43  32
( 5940 1tyv  )  ( 5714 1rwr_A)     0.4149   0.4893   5.7871 (  12   64  190)   1     0.4980   0.6983   43  30
( 5940 1tyv  )  ( 5940 1tyv  )     1.0000   1.0000   0.0000 (   0  631  903)   0     1.0000   1.0000   43  43
( 5940 1tyv  )  ( 6229 1vh4_A)     0.2446   0.2531   7.0361 (  11   28  136)   0     0.4533   0.6674   43  26

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