------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6023 1uhv_A) ( 335 1bag ) 0.3636 0.5714 3.0051 ( 0 0 6) 0 0.3857 0.5714 11 7 ( 6023 1uhv_A) ( 367 1bf2 ) 0.6363 0.6999 3.2249 ( 0 6 21) 0 0.6363 0.6999 11 10 ( 6023 1uhv_A) ( 1028 1e43_A) 0.6363 0.7777 3.0670 ( 0 6 21) 0 0.6363 0.7777 11 9 ( 6023 1uhv_A) ( 1729 1g5a_A) 0.3636 0.5713 4.8426 ( 0 0 6) 0 0.3857 0.5713 11 7 ( 6023 1uhv_A) ( 1839 1gjw_A) 0.6361 0.9977 4.9393 ( 0 8 21) 0 0.6361 0.9977 11 7 ( 6023 1uhv_A) ( 2063 1h3g_A) 0.7269 0.8880 4.5421 ( 0 11 28) 0 0.7269 0.8880 11 9 ( 6023 1uhv_A) ( 2232 1hl9_A) 0.4545 0.5555 4.4386 ( 0 1 10) 0 0.6362 0.7773 11 9 ( 6023 1uhv_A) ( 2311 1hx0_A) 0.4545 0.6250 3.3104 ( 0 3 10) 0 0.6362 0.8743 11 8 ( 6023 1uhv_A) ( 2622 1iv8_A) 0.7269 0.9983 4.6285 ( 0 11 28) 0 0.7269 0.9983 11 8 ( 6023 1uhv_A) ( 2687 1j0h_A) 0.7269 0.9983 4.6059 ( 0 11 28) 0 0.7269 0.9983 11 8 ( 6023 1uhv_A) ( 2879 1ji1_A) 0.7270 0.8880 4.4687 ( 0 11 28) 0 0.7270 0.8880 11 9 ( 6023 1uhv_A) ( 2882 1ji2_A) 0.7270 0.9988 4.1891 ( 0 11 28) 0 0.7270 0.9988 11 8 ( 6023 1uhv_A) ( 3426 1ktb_A) 0.6363 0.8746 3.8137 ( 0 5 21) 0 0.6363 0.8746 11 8 ( 6023 1uhv_A) ( 3839 1m53_A) 0.6362 0.9988 4.1918 ( 0 6 21) 0 0.6362 0.9988 11 7 ( 6023 1uhv_A) ( 3878 1m7x_A) 0.6363 0.9990 4.0693 ( 0 5 21) 0 0.6363 0.9990 11 7 ( 6023 1uhv_A) ( 4072 1mxg_A) 0.5454 0.8567 3.9180 ( 0 4 15) 0 0.5454 0.8568 11 7 ( 6023 1uhv_A) ( 4335 1nof_A) 0.8180 0.8997 3.2751 ( 0 14 36) 0 0.8180 0.8997 11 10 ( 6023 1uhv_A) ( 4646 1ogs_A) 0.3636 0.3333 4.4138 ( 0 1 6) 0 0.8181 0.7499 11 12 ( 6023 1uhv_A) ( 5341 1qho_A) 0.4545 0.6247 5.3946 ( 0 2 10) 0 0.6357 0.8718 11 8 ( 6023 1uhv_A) ( 5472 1qw9_A) 0.5453 0.5453 5.0268 ( 0 4 15) 0 0.5453 0.5453 11 11 ( 6023 1uhv_A) ( 5546 1r46_A) 0.5454 0.6665 4.3454 ( 0 6 15) 0 0.5454 0.6665 11 9 ( 6023 1uhv_A) ( 5953 1uas_A) 0.7271 0.9992 3.8273 ( 0 11 28) 0 0.7271 0.9992 11 8 ( 6023 1uhv_A) ( 6023 1uhv_A) 1.0000 1.0000 0.0000 ( 0 31 55) 0 1.0000 1.0000 11 11 ( 6023 1uhv_A) ( 6067 1uok ) 0.6362 0.9989 4.1495 ( 0 6 21) 0 0.6363 0.9989 11 7 ( 6023 1uhv_A) ( 6644 7taa ) 0.7271 0.8884 3.8678 ( 0 11 28) 0 0.7271 0.8884 11 9 -------------------------------------------------------------------------------------------------------------------------