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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6331 1who  )  (   22 1a25_A)     0.2970   0.2862   7.8824 (   1    3    6)   0     0.2970   0.2862    6   9
( 6331 1who  )  (  357 1bdy_A)     0.8241   0.4993   8.8690 (   0    7   10)   0     0.8241   0.4993    6  10
( 6331 1who  )  (  613 1cjy_A)     0.3473   0.3418   7.8750 (   2    7   10)   0     0.9998   0.7499    6   8
( 6331 1who  )  (  755 1d5r_A)     0.6661   0.4000   5.7900 (   0    4    6)   0     0.8279   0.5735    6  10
( 6331 1who  )  (  790 1dce_A)     0.9982   0.8563   4.6862 (   0    8   15)   0     0.9998   0.8571    6   7
( 6331 1who  )  ( 1068 1e7u_A)     0.6660   0.4998   5.9601 (   0    4    6)   0     0.6660   0.4998    6   8
( 6331 1who  )  ( 1874 1gmi_A)     0.6654   0.4443   7.0959 (   0    2    6)   0     0.6654   0.4443    6   9
( 6331 1who  )  ( 3187 1k5w_A)     0.9996   0.6000   3.2867 (   0   10   15)   0     0.9996   0.6000    6  10
( 6331 1who  )  ( 3534 1l4i_A)     0.9990   0.8567   3.9908 (   0   11   15)   0     0.9990   0.8567    6   7
( 6331 1who  )  ( 4909 1p5v_A)     0.9994   0.8569   3.5468 (   0   11   15)   0     0.9994   0.8569    6   7
( 6331 1who  )  ( 5270 1qas_A)     0.6662   0.4444   5.5658 (   0    4    6)   0     0.6662   0.4444    6   9
( 6331 1who  )  ( 5414 1qpx_A)     0.9981   0.6664   4.7012 (   0   11   15)   0     0.9981   0.6664    6   9
( 6331 1who  )  ( 5631 1rh8_A)   nil
( 6331 1who  )  ( 5700 1rsy  )     0.9993   0.6666   3.7376 (   0   10   15)   0     0.9993   0.6666    6   9
( 6331 1who  )  ( 6015 1ugk_A)     0.2970   0.2862   7.2574 (   1    3    6)   0     0.2970   0.2862    6   9
( 6331 1who  )  ( 6156 1v27_A)     0.8327   0.7140   4.4935 (   0    3   10)   0     0.8327   0.7140    6   7
( 6331 1who  )  ( 6331 1who  )     1.0000   1.0000   0.0000 (   0   11   15)   0     1.0000   1.0000    6   6
( 6331 1who  )  ( 6594 3rpb_A)     0.6663   0.4444   5.2430 (   0    3    6)   0     0.6663   0.4444    6   9

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